Gene detail

Gene detail information of Glyur001179s00026676

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01630.1	3.00E-67	Sec14p-like phosphatidylinositol transfer family protein
NR	XP_003602742.1	2.99E-125	Sec14 cytosolic factor [Medicago truncatula]
Swissprot	tr\|F4JLE5\|SFH1_ARATH	5.00E-10	Phosphatidylinositol/phosphatidylcholine transfer protein SFH1
trEMBL	tr\|G7J392\|G7J392_MEDTR	1.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:AFK48922.1}

Sequence

Transcript Sequence

>Glyur001179s00026676.1
CTTGTTTTTATATATGTGATAATAACAACATGCCATTGTACCAAAAAAAAAAATAACAACATGCCATTAGTCAGCGAGGTGTTGAGTGAGCATTGAGCAAGGAGGGAAAAGNAATTGGTGCTTTTGAGAGACAAATTTGATTCAAGGGAATGGAGGCACTGAGCGCTGATTCCAATTCCAATCATAACTTAGCCAAAGAAGAAGCAAAAGCGCAAGTGCTTGTTGTAGATGANGGAGGCGCATTGAAAGATAGCACAGACGCGGAACTCACCAAAATCAGTCTCATGAGAGCTTTTGTTGAAAGCCGAGATCCCTCTTCCAAGGAAGTGGATGATTTGATGATTAGAAGATTCTTGCGAGCTCGTGATTTGGATGTAGAGAAGGCTTCGGCGATGTTCCTCAAGTACTTGAAATGGAGGCATTCATTTGTTCCAAATGGTTCTATATCCCCTTCTGAGATCCCTGATGATATTGCACAGGGGAAGATGTTCGTTCAAGGAGTCGATAAGAAGGGTCGACCTATAACTGTTGCCTTTGCCGCAAAACATTTCCAAAACAAAAATGGTTTGGATGCATTCAAACGGTATGTAGTCTTTGCTCTTGAAAAACTAATTTCAAGGATGCCACCGGGGCAAGAAAAGTTTCTTGCTATTGGAGATATAAAGGGATGGGGATATGCAAACAGTGACCTTCGTGGATACCTTAATGCTCTAGCCATTTTGCAGATAGTATTTGTGGAGAACAAGAAGCTGAAATCAACACTGTTGGAAGAGATAGATGAGAGTCAGCTCCCAGAGATATACGGAGGCAAACTTCCATTAGTACCGATCCAGGATTCCTGATTAAATAATCACAGGCAACGGAAACAAGGATAGGCCAACACAGAATTAGAAAGAAAGAAAATTNACAAGGCCTTTTTTTATGTATTTGTTTGCTAATTTATTTTTCTTCAGATAACTCCAACTGCTGCAGCATCAGGTGTTAAATATAGATTGCCATTCTNTAGTTGGTCAGGTTATCTTAGCAGATTAAATTAACCTTCATTGTACAATTCTTGCATGCTTAATGCTTATAACTGGCTATTTCACATGGCCCTGTTCTTTGTTTGCTAGCTATAAATTGCAGCATCAAATTATCAATTACATATTTACATCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01179	40234	42485	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001179s00026676.1	PF03765.10	CRAL_TRIO_N	52	86	2.80E-07
Glyur001179s00026676.1	PF00650.15	CRAL_TRIO	110	183	6.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.122
SRR1783600	control	9.574
SRR1783602	moderate drought stress	5.172
SRR1811619	moderate drought stress	5.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.714
DRR006520	Root Summer glycyrrhizin high producing strain	3.530
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	2.779
DRR006524	Root Summer glycyrrhizin low producing strain	2.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.334
SRR2868004	Drought Stress (root)	10.828
SRR2967015	Control (root)	8.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.855
SRR9715740	Leaf	50.828
SRR9715741	Leaf	35.762
SRR9715739	Root	0.626
SRR9715742	Root	1.922
SRR9715743	Root	1.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.546
SRR8749028	MeJA induced 9h	31.801
SRR8749029	MeJA induced 9h	18.879
SRR8749030	Uninduced	14.747
SRR8749031	Uninduced	6.718
SRR8749032	Uninduced	5.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.592
SRR8400027	Control - Root	10.427