Gene detail information of Glyur001179s00026671.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61890.1 | 2.00E-16 | Integrase-type DNA-binding superfamily protein |
| NR | XP_003602747.1 | 4.10E-63 | Ethylene-responsive transcription factor RAP2-6 [Medicago truncatula] |
| Swissprot | tr|Q9FH54|EF114_ARATH | 1.00E-42 | Ethylene-responsive transcription factor ERF114 |
| trEMBL | tr|G7J397|G7J397_MEDTR | 2.00E-63 | AP2 domain class transcription factor {ECO:0000313|EMBL:AES72998.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01179 | 18331 | 20100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001179s00026671.1 | PF00847.15 | AP2 | 88 | 127 | 2.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.589 |
| SRR1783600 | control | 0.642 |
| SRR1783602 | moderate drought stress | 0.501 |
| SRR1811619 | moderate drought stress | 0.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.477 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.360 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.860 |
| SRR2868004 | Drought Stress (root) | 2.792 |
| SRR2967015 | Control (root) | 1.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.942 |
| SRR9715740 | Leaf | 6.162 |
| SRR9715741 | Leaf | 4.366 |
| SRR9715739 | Root | 0.465 |
| SRR9715742 | Root | 0.099 |
| SRR9715743 | Root | 0.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.478 |
| SRR8749028 | MeJA induced 9h | 110.472 |
| SRR8749029 | MeJA induced 9h | 19.868 |
| SRR8749030 | Uninduced | 56.116 |
| SRR8749031 | Uninduced | 8.956 |
| SRR8749032 | Uninduced | 8.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.517 |
| SRR8400027 | Control - Root | 1.449 |