Gene detail information of Glyur001179s00026670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61910.3 | 1.00E-41 | DCD (Development and Cell Death) domain protein |
| NR | XP_003602748.1 | 0 | hypothetical protein MTR_3g098590 [Medicago truncatula] |
| COG | YP_006864142.1 | 1.00E-06 | DNA methylase domain-containing protein [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|P37707|B2_DAUCA | 2.00E-17 | B2 protein |
| trEMBL | tr|G7J398|G7J398_MEDTR | 0 | DCD (Development and cell death) domain protein {ECO:0000313|EMBL:AES72999.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01179 | 11240 | 15361 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001179s00026670.1 | PF10539.4 | Dev_Cell_Death | 14 | 138 | 9.80E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.447 |
| SRR1783600 | control | 24.446 |
| SRR1783602 | moderate drought stress | 29.756 |
| SRR1811619 | moderate drought stress | 30.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.179 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.442 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.116 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.878 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.829 |
| SRR2868004 | Drought Stress (root) | 14.534 |
| SRR2967015 | Control (root) | 16.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.513 |
| SRR9715740 | Leaf | 3.778 |
| SRR9715741 | Leaf | 3.359 |
| SRR9715739 | Root | 4.093 |
| SRR9715742 | Root | 9.990 |
| SRR9715743 | Root | 7.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.639 |
| SRR8749028 | MeJA induced 9h | 41.581 |
| SRR8749029 | MeJA induced 9h | 33.366 |
| SRR8749030 | Uninduced | 15.557 |
| SRR8749031 | Uninduced | 11.472 |
| SRR8749032 | Uninduced | 8.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.985 |
| SRR8400027 | Control - Root | 17.448 |