Gene detail information of Glyur001177s00035487 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14220.1 | 3.00E-09 | Ribonuclease T2 family protein |
| NR | XP_003517990.1 | 1.51E-11 | PREDICTED: ribonuclease 3-like [Glycine max] |
| Swissprot | tr|P80022|RNLE_SOLLC | 2.00E-08 | Extracellular ribonuclease LE (Precursor) |
| trEMBL | tr|I1J5R4|I1J5R4_SOYBN | 6.00E-12 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G05850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01177 | 6414 | 8380 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001177s00035487.1 | PF00445.13 | Ribonuclease_T2 | 28 | 54 | 6.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.918 |
| SRR1783600 | control | 0.922 |
| SRR1783602 | moderate drought stress | 0.928 |
| SRR1811619 | moderate drought stress | 1.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.397 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.967 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.020 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.991 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.043 |
| SRR2868004 | Drought Stress (root) | 0.053 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.128 |
| SRR9715740 | Leaf | 3.779 |
| SRR9715741 | Leaf | 5.289 |
| SRR9715739 | Root | 2.190 |
| SRR9715742 | Root | 1.431 |
| SRR9715743 | Root | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.031 |
| SRR8749028 | MeJA induced 9h | 0.879 |
| SRR8749029 | MeJA induced 9h | 0.967 |
| SRR8749030 | Uninduced | 0.123 |
| SRR8749031 | Uninduced | 0.101 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.193 |
| SRR8400027 | Control - Root | 5.690 |