Gene detail information of Glyur001176s00030752 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22480.2 | 1.00E-43 | prefoldin 2 |
| NR | XP_003598099.1 | 2.50E-90 | hypothetical protein MTR_3g007250 [Medicago truncatula] |
| Swissprot | tr|Q9LJ98|PFD2_ARATH | 4.00E-66 | Probable prefoldin subunit 2 |
| trEMBL | tr|G7J0A7|G7J0A7_MEDTR | 9.00E-91 | Prefoldin {ECO:0000313|EMBL:AES68350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01176 | 2446 | 5468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001176s00030752.1 | PF01920.15 | Prefoldin_2 | 30 | 134 | 3.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.633 |
| SRR1783600 | control | 25.470 |
| SRR1783602 | moderate drought stress | 19.577 |
| SRR1811619 | moderate drought stress | 19.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.854 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.509 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.621 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.072 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 81.318 |
| SRR2868004 | Drought Stress (root) | 61.545 |
| SRR2967015 | Control (root) | 57.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 51.024 |
| SRR9715740 | Leaf | 51.782 |
| SRR9715741 | Leaf | 55.015 |
| SRR9715739 | Root | 24.196 |
| SRR9715742 | Root | 38.548 |
| SRR9715743 | Root | 33.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 167.289 |
| SRR8749028 | MeJA induced 9h | 88.132 |
| SRR8749029 | MeJA induced 9h | 106.421 |
| SRR8749030 | Uninduced | 53.057 |
| SRR8749031 | Uninduced | 33.833 |
| SRR8749032 | Uninduced | 44.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.662 |
| SRR8400027 | Control - Root | 63.744 |