Gene detail information of Glyur001173s00032977 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04910.1 | 1.00E-56 | |
| NR | NP_001234981.1 | 4.54E-119 | uncharacterized protein LOC100306178 [Glycine max] |
| trEMBL | tr|C6SYB5|C6SYB5_SOYBN | 2.00E-119 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU14238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01173 | 65666 | 69694 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001173s00032977.1 | PF14966.1 | DNA_repr_REX1B | 28 | 115 | 1.30E-31 |
| Glyur001173s00032977.2 | PF14966.1 | DNA_repr_REX1B | 28 | 123 | 9.80E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.773 |
| SRR1783600 | control | 9.883 |
| SRR1783602 | moderate drought stress | 19.924 |
| SRR1811619 | moderate drought stress | 19.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.561 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.435 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.531 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.184 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.900 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.058 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.941 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.778 |
| SRR2868004 | Drought Stress (root) | 19.797 |
| SRR2967015 | Control (root) | 16.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.866 |
| SRR9715740 | Leaf | 14.958 |
| SRR9715741 | Leaf | 12.356 |
| SRR9715739 | Root | 5.857 |
| SRR9715742 | Root | 5.883 |
| SRR9715743 | Root | 8.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.336 |
| SRR8749028 | MeJA induced 9h | 29.310 |
| SRR8749029 | MeJA induced 9h | 40.860 |
| SRR8749030 | Uninduced | 31.722 |
| SRR8749031 | Uninduced | 32.548 |
| SRR8749032 | Uninduced | 40.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.107 |
| SRR8400027 | Control - Root | 20.534 |