Gene detail information of Glyur001173s00032976 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11460.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004494044.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Cicer arietinum] |
| Swissprot | tr|Q9CAY1|PP223_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g11460 |
| trEMBL | tr|A0A072VV86|A0A072VV86_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH42010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01173 | 61376 | 63298 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001173s00032976.1 | PF01535.15 | PPR | 32 | 60 | 0.013 |
| Glyur001173s00032976.1 | PF01535.15 | PPR | 101 | 125 | 0.058 |
| Glyur001173s00032976.1 | PF13041.1 | PPR_2 | 132 | 178 | 2.60E-08 |
| Glyur001173s00032976.1 | PF01535.15 | PPR | 207 | 232 | 0.19 |
| Glyur001173s00032976.1 | PF13041.1 | PPR_2 | 233 | 271 | 1.90E-10 |
| Glyur001173s00032976.1 | PF01535.15 | PPR | 308 | 330 | 0.14 |
| Glyur001173s00032976.1 | PF13041.1 | PPR_2 | 336 | 383 | 3.60E-10 |
| Glyur001173s00032976.1 | PF01535.15 | PPR | 410 | 436 | 0.00043 |
| Glyur001173s00032976.1 | PF14432.1 | DYW_deaminase | 521 | 630 | 1.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.509 |
| SRR1783600 | control | 1.511 |
| SRR1783602 | moderate drought stress | 1.934 |
| SRR1811619 | moderate drought stress | 1.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.917 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.665 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.617 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.942 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.465 |
| SRR2868004 | Drought Stress (root) | 4.225 |
| SRR2967015 | Control (root) | 5.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.274 |
| SRR9715740 | Leaf | 1.688 |
| SRR9715741 | Leaf | 1.598 |
| SRR9715739 | Root | 0.895 |
| SRR9715742 | Root | 2.362 |
| SRR9715743 | Root | 2.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.571 |
| SRR8749028 | MeJA induced 9h | 5.729 |
| SRR8749029 | MeJA induced 9h | 1.205 |
| SRR8749030 | Uninduced | 1.172 |
| SRR8749031 | Uninduced | 1.029 |
| SRR8749032 | Uninduced | 0.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.643 |
| SRR8400027 | Control - Root | 4.166 |