Gene detail information of Glyur001173s00032974 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04910.1 | 1.00E-15 | |
| NR | KHN26440.1 | 1.38E-32 | hypothetical protein glysoja_030394 [Glycine soja] |
| trEMBL | tr|C6SYB5|C6SYB5_SOYBN | 6.00E-33 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU14238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01173 | 44999 | 51818 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001173s00032974.1 | PF14966.1 | DNA_repr_REX1B | 2 | 63 | 1.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.730 |
| SRR1783600 | control | 6.366 |
| SRR1783602 | moderate drought stress | 13.183 |
| SRR1811619 | moderate drought stress | 13.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.873 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.987 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.295 |
| SRR2868004 | Drought Stress (root) | 20.475 |
| SRR2967015 | Control (root) | 16.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.984 |
| SRR9715740 | Leaf | 15.609 |
| SRR9715741 | Leaf | 15.722 |
| SRR9715739 | Root | 6.101 |
| SRR9715742 | Root | 8.991 |
| SRR9715743 | Root | 8.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.876 |
| SRR8749028 | MeJA induced 9h | 31.572 |
| SRR8749029 | MeJA induced 9h | 42.286 |
| SRR8749030 | Uninduced | 30.543 |
| SRR8749031 | Uninduced | 37.084 |
| SRR8749032 | Uninduced | 38.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.004 |
| SRR8400027 | Control - Root | 18.096 |