Gene detail information of Glyur001171s00030964 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22430.1 | 9.00E-44 | homeobox protein 6 |
| NR | KHN06556.1 | 3.44E-145 | Homeobox-leucine zipper protein ATHB-16 [Glycine soja] |
| Swissprot | tr|P46668|ATHB6_ARATH | 1.00E-60 | Homeobox-leucine zipper protein ATHB-6 |
| trEMBL | tr|V7CQT8|V7CQT8_PHAVU | 3.00E-133 | Uncharacterized protein {ECO:0000313|EMBL:ESW31703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01171 | 49587 | 52508 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001171s00030964.1 | PF00046.24 | Homeobox | 58 | 111 | 1.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 292.606 |
| SRR1783600 | control | 297.233 |
| SRR1783602 | moderate drought stress | 299.495 |
| SRR1811619 | moderate drought stress | 303.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 324.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 322.546 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 120.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 119.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 584.913 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 579.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 98.939 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 98.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 340.936 |
| SRR2868004 | Drought Stress (root) | 302.139 |
| SRR2967015 | Control (root) | 442.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 257.956 |
| SRR9715740 | Leaf | 221.246 |
| SRR9715741 | Leaf | 266.583 |
| SRR9715739 | Root | 180.184 |
| SRR9715742 | Root | 377.919 |
| SRR9715743 | Root | 339.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 100.602 |
| SRR8749028 | MeJA induced 9h | 53.124 |
| SRR8749029 | MeJA induced 9h | 103.101 |
| SRR8749030 | Uninduced | 67.387 |
| SRR8749031 | Uninduced | 16.552 |
| SRR8749032 | Uninduced | 12.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 509.971 |
| SRR8400027 | Control - Root | 442.264 |