Gene detail

Gene detail information of Glyur001171s00030958

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G40050.1	Protein of unknown function (DUF3550/UPF0682)
NR	XP_004504108.1	PREDICTED: protein SCAI-like [Cicer arietinum]
trEMBL	tr\|I1K4H1\|I1K4H1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30980.1}

Sequence

Transcript Sequence

>Glyur001171s00030958.1
ATGCCTTTCTCCTTGACAAACAAAAGTGTAACCGCCCTCTTCAGTCTTCACCGTTCCTCTCTTTTGCGTTCCCGACACACACAAACACACACACACACATTTCGTTTCAATCTCCGATTACTCGTTTTCCCTTTTCCTGATTCCGAATTCTCCGATGACCGGCACCGAGAACCGGCACCGGACGGAGAACTGAAAAAAGAGCTATCTCTCCTCTCTTCTCCGGCTACAGGCATGTCTGAGGACAACGACGTGACGCTACAGACCTTCCGAGCGCTGATAGAGAGTGCGGACCGCAAGTTCGCTAGGGTTCGCGACGTGCCTGCTTACGGTCGCGTGAGCCAGAACCATTTCTTCCACAAGGTCTTCAAGTCCTACACGCGCCTCTGGAAGTACCAGCAGGAGAACCGCGCGAAGCTGGTTCAGTGTGGCCTCAAGCGATGGGAAATCGGTGAGATCGCGAGCCGAATCGGACAGCTCTACTTCGGCCAGTACATGAGGACCAGCGAGAGCAGGTTCCTTGTTGAGGCCTACGTCTTCTACGAGGCTATACTCAGCAGAAGGTACTTCGAAGGATCCGAAGCTTCCACTAAAGATCTGGGAGTAAGGTCCAAGGAGTTGCGCTTCTATGCTAGGTTCTTGTTGGTTTCGGTGATTCTGAACCGCACCGAGATGGTCAAGCATCTTATGGACCGGTTCGTGGCTCTGGTTGACGATTGCAAGAGTAACTTCCGGGAAACTAACTTTAAAGAATGGAAGCAAGTGGTGCAAGAAATTGTCCGCTTCACGAAAGCAGATAAGGGCTTTAGCTTGAGGCCTATGCGTTATTGTGCCACATTTGATTCTCATCGGGCTTCTCTTCCTTATGTGGCTCGATTTCATGCAAAGAGGGTTTTAAAATTTCATGATGCACTGTTGACAAGCTATCATCGAAATGAGGTCAAATTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTTGTGGATCATTCTACCAAAAGCATACGGTTAAACCTAAAGAGAATGGCGACTCAATTGATCATTCAGGAGCTTCTGGGATAATAGACATGAACCTTGCTGCAGACATGACAGATCCAACTATACCTCCTAATCCTAGAAAGGCTACCTTGTATCGTCCATCTGTGACACATGTGATAGCAGTTATGGCAACAATTTGTGAGGAGCTTCCACCAGACAGTGTTGTGCTAGTATATCTTTCAGCCTCAGGGAAGGCTGGTCTTAATAATGTCTCCCAGATGGAAAATTCTGGAGGGTCTTCCAAATATTTGAGACATAAAGTCCTTTCTCAGACTTCCCAAGAGCTGAATTCTGGAACTTCAGAATCTCAAAATAACGGCGAGAGGGAATCAAGTTGTCATGACAATTATCTGTGGTTTGGTCCCAAGGGAAATGGTGATTCGAGTAACCTCTACCCCGGCGATCTTATTCCCTTCACTCGGAAGCCTCTTTTCTTGATTATTGATACTGAAAGGGGGGAGACAGCGGCTCTATTTCTTTCACCTTTAAGGCCCATTTTTAAGAACCCGACTGATGTAAATGTACATAATGGAAGCCAATTTACCTTTTTCTTGACTGCTCCTTTATCTGCATTTTGCCAAATGATTGGTCTCTCCCCCGATGAGGCTGATACAGATATCTACAAAGAAGCTGAGAACATAATGTCTAATGCTTTCACTGAGTTGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCACAAGTTATAACTGATCCATTTTTAAGGAGGCTTATTCTAAGATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAGTGAAATCTTTCTGCCGCTTTGCCTACCCCATCTACCCACTTCTGTTGCACCAAAGTCTGAAGCTGTGCGCTCCGCAGTCGTACGACTTGCCATGCACTTTGACGTTGCTGACTCCTTTCACTTTACTGATACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01171	1358	6633	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

molecular_function
GO:0003714 transcription corepressor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001171s00030958.1	PF12070.3	DUF3550	91	612	1.50E-174

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.317
SRR1783600	control	15.299
SRR1783602	moderate drought stress	11.769
SRR1811619	moderate drought stress	11.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.951
DRR006520	Root Summer glycyrrhizin high producing strain	8.889
DRR006521	Root Winter glycyrrhizin high producing strain	7.627
DRR006522	Root Winter glycyrrhizin high producing strain	7.544
DRR006523	Root Summer glycyrrhizin low producing strain	8.863
DRR006524	Root Summer glycyrrhizin low producing strain	9.095
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.607
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.078
SRR2868004	Drought Stress (root)	27.097
SRR2967015	Control (root)	27.718

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.176
SRR9715740	Leaf	10.428
SRR9715741	Leaf	11.642
SRR9715739	Root	15.810
SRR9715742	Root	16.149
SRR9715743	Root	16.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.979
SRR8749028	MeJA induced 9h	13.145
SRR8749029	MeJA induced 9h	9.400
SRR8749030	Uninduced	9.348
SRR8749031	Uninduced	8.193
SRR8749032	Uninduced	2.948

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.070
SRR8400027	Control - Root	29.941