Gene detail

Gene detail information of Glyur001170s00029949.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35390.1	2.00E-102	Leucine-rich repeat protein kinase family protein
NR	XP_004513119.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RLK-like [Cicer arietinum]
COG	YP_004429344.1	5.00E-16	leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5]
Swissprot	tr\|C0LGU0\|RLK_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor)
trEMBL	tr\|A0A072UN50\|A0A072UN50_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH27280.1}

Sequence

Transcript Sequence

>Glyur001170s00029949.1
ATGGTAATGGCACTCATCACCACCAGTACTGGTTTAACTACGCCTTATTGTTTTCCAATATTCTCATTCCCATTCAATATCCTCTTATTATTGTTATTATTCTATTACGTCGTCGTCGTCGTCGTCGCTTCTTCAGACACAGAATCTCTCCTCAAATTCAAGGAGTCCCTACAAAACGCCAACGCATTGTCGTCTTGGAACAATGCATCCTCCTCCTCCTCCTCCTCCCCGGCCCCTCCTCCCTGCACGGATGGTCACGCGAATTGGCAAGGCGTTGTGTGCTACAGGGGACACGTGTGGGGCCTACAGCTGGAGAAGATGGGGCTGAAGGGCGCCGTCGACGTGGACTCCCTTAAGGATTTGCCCTATCTCAGAACCATCAGCCTTATGCACAACGATTTCGACACCGAATGGCCACAGCTGAACAAGCTGATGGGCCTCAAGACCATCTACCTCTCCAACAACAAGTTCTCCGGTGATGTTCCCCCTCAGGCCTTTCANGGCATGCAATGGCTCAAGAGACTCCATCTCTCCAACAACCACTTCACTGGCCCCATCCCATCCTCCTTGGCCTCCCTGCCCAGGCTCATGGATTTGCGGCTGGACGGCAACAAATTCACCGGCCCCATCCCCCAATTTGGCGAGACGACATTAATCAAGTCGTTCAGCGTGGCCAATAACCGACTGGAGGGAGAAATACCGGCCAGCCTTAGTAGGATTCCGGCGTCGTCATTCTCCGGCAATGAAGGACTGTGTGGAGCCCCCTTGGGCGCGTGCTCCTCCAAACACAAGAAGTCAATCGACGCGAGCGCTGTTGTGGCTGTGGTCCTTGTCAGTGTGGCAGTGCTCGTGATTGCTGCGGTCATATTGTTGTTACTGGTCCGTAGAAGAAGAAGAAGAAGAACAAAACAGGAGCAGGAACAAGAAGGTGTTGTGGTGTCTAGGGATCATCATAATCACAATAATAAGAAAGGATCAGANGAGGAGGTGAGTGGTCATAGTCATGATAGCAATGACAGTACTGACAATAGGTCGACGACAAGGTCATCTGCAAGCAGCCAAAGTAGTAGCAAGAATAAAGGAGGAGACAACAGCAGCAGCATGAGGTTGTCGTTTGTGAGGGAAGACGCAGAGCAGTTTGATTTGCAGGAACTGCTGAGAGCCTCTGCGGAGGTGTTGGGCAGTGGTTGTTACAGTTCCTCCTACAAGGCGGCTCTGTTAAGTGGCCCCACCGTGGTGGTCAAGAGATTCAGGCAAATGAACAATGTNGGGAGGGGAGAGTTCCAGGAGCACATGAGGAGGTTGGGAAGGCTAACCCATCCCAATCTCCTCCCCCTCCTCGCTTACTACTACAGAAAGGAGGAAAAGCTCCTGGTCACCGACTTCGTTCACAATGGCAGCTTGGCCGTTCGTCTTCACGGACACCAAGCCATAGGGCAACCNAGCCTTGATTGGGCAAGCCGGTTGAAGATAGTGAAAGGGATAGCAAGGGGTGTTGAGTATCTGTACAGGGAGATGCCAAGCCTAATTGCACCCCACGGACACCTTAAATCCTCAAATGTTCTCCTCACCGAGTCTCTGGAGCCTGTCCTCAATGATTATGGGTTGGTACCAATGATAAACCAGGATCTTGCTCCTGACATNATGGTCATATACAAGTCCCCAGAGTATTTGCAGAACGGGCGCATCANCAAGAAGACGGATGTGTGGGGTCTTGGGATACTCATCCTAGAGATTCTCACAGGGAAGTTCCCTGCCATCCTACAACAGGGGAGATCATCAGATCATCATCACGAGTACAGTTTGGCGACTTGGGTGGAGTCGGTTGTCCCCGATGCAGATCAAGAGTACTGGAGGAGTAGTGAGGTGTTTGATAGAGAGATGGAGATTCCAAAAAACAGTGAGGGGGAGATGGTGAAGCTTTTGAAGGTGGCATTGGCGTGTTGTGAGGCGGATGTGGAGAGGAGATGGGATTTGAAAGAAGCGGTGGACAAAATTCAAGAGGTGAGGGAGAGCTGGGAGCAGAGAGATATTATTGGTACTGCAGCAGCAGATCAGGATGATTTCTATTCTTCCTATGCTAGTGAAGAAGCTGACACGCGGCCGTCTTCAAGGGCATTGTCATCAGAAGAAGAAGTTAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01170	72624	74962	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001170s00029949.1	PF08263.7	LRRNT_2	44	94	7.20E-07
Glyur001170s00029949.1	PF13855.1	LRR_8	147	206	2.80E-08
Glyur001170s00029949.1	PF00069.20	Pkinase	391	664	3.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.296
SRR1811619	moderate drought stress	0.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.279
DRR006524	Root Summer glycyrrhizin low producing strain	1.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.847
SRR2868004	Drought Stress (root)	1.847
SRR2967015	Control (root)	1.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	1.404
SRR9715741	Leaf	0.000
SRR9715739	Root	0.197
SRR9715742	Root	0.000
SRR9715743	Root	0.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.508
SRR8400027	Control - Root	0.042