Gene detail

Gene detail information of Glyur001170s00029948.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24370.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
NR	XP_004513115.1	0	PREDICTED: U-box domain-containing protein 52-like isoform X1 [Cicer arietinum]
COG	YP_004179485.1	3.00E-23	serine/threonine protein kinase [Isosphaera pallida ATCC 43644]
Swissprot	tr\|Q9FKG6\|PUB52_ARATH	5.00E-144	Serine/threonine-protein kinase
trEMBL	tr\|A0A072UBR5\|A0A072UBR5_MEDTR	0	Adenine nucleotide alpha hydrolase-like domain kinase {ECO:0000313\|EMBL:KEH27279.1}

Sequence

Transcript Sequence

>Glyur001170s00029948.1
ATGTCAAGGTTGAGTGCAGAGAAGAAACTAGGTGCAGGACGCGTGGTGGCCGTGGCAATTGAGAATAACAAGACAAGCCAACACGCGACCAAGTGGACAGTGGACAATCTTCTTCCCAAAGACCAATGCCTCCTCCTAATCCATGTTAAACCAAGACCNGCTAATTCCACTCCAACACCATCGGGAAACCAAGTAGCCAACGATGTGAATGAAGATGTGGCCAACAACGAATCCAAAGACCTTTTTGACTCATTTCGTGTCTTCTGCAATAGAAAAAGTATACAATGCAAGGAAGTGTTGTTGGAGGACATGGACATATCCAAGGCATTAATAGACTGCATTTCCATGCATTCCATTGAGCTTCTGGTACTCGGGGCGCCATCAAGGGGTGGCATTGTTAGAAGATTTAGGACAACGGATGTTCCAAGCATCGTTTCAAAAGGGGCACCACCATACTGCACTGTCTACATAATTTCTAAAGGAAAAATATCAACTGTGAGATCTGCTACGGCTCCACTTCCAAAAGCGGCGCCACCGACACGTCACAACCAATTGCAACCGCAACAGCCACAGACACAGCCAACCCGAAGCCCTGATAGAATAGACCTGCAATTGTCACGCAACTACCCACCACGACCTTCATCAGAGAAGCCAACATATGGGGCGCGCCAGCTTCTGGATGATGATGAAATCATATCACCATTCATAAGAGGTGGTAGAGCAATGAACAAATCACATGAGTCCTCAATCCCTGATTCTGATATATCATTTGTGAGTAGTGGAAGGCCAAGTGTTGATCGAATGTTCCCTTCATTGTATGAAGATCTAGACAATGGAATTGTCCCCAGACTTTCATGTGGGTCGGATTTTGACTCCAAGAGCTATGGTTCATCCTTCTCGGGAGCCAAGTCAATTGATATGGCGCCTCCTTTTGATAACTTCTCATTCAGCTCGCAAAGCAGTGGTGGGATATCATCGTTAAGGTTATCNGACACCACGGATGAGGTCGAAGCTGAGATGAGGAGACTAAAGCTAGAACTGAAGCAAACAATGGAAATGTACAGTTCAGCCTGCAAGGAAGCCCTGAATGCAAAGCAGAAGGCAATGGAACTTCAACGATGGAAAATTGAAGAAGAAAAGAAGTTGGAAGAGGCACGGATATCGGAAGAAGCGGCAATGACAATGGTAGAAATGGAGAAAGAAAAGTGTAGAGCTGCCATGAAGGCGGCTGAAGCATCTCATAGAATTGCAGCACTGGAAGCACAGAAAAGAATGAATGCGGAGAGGAAGAGCGAAACAGAAGCAGTTCACAGGAAGAAGGCAGATGACACTTTTGGGCATGGTAGTGCTGCCAGGTACAGAAGATACACTATTGAGGAAATTGAAGAGGCAACCAAAAACTTTTCTGACTCCCTCAAGATCGGCGAAGGAGGCTATGGTCCTGTATTCAAGTGTGAACTAGATCACACCCAAGTTGCAATCAAAGTTTTGAAGTCTGATGCAGCTCAAGGACGTGCACAATTTCAGCAGGAAGTTGAAGTGTTGAGTTGCATAAGGCATCCAAACATGGTCCTTCTGCTGGGAGCATGCCCAGAATATGGTTGCATAGTGTATGAGTACATGGCCAATGGAAGCTTGGATGACTGCCTCTTCCGGAGGGGGAAGTCACCACCCCTTCCNTGGCAGTTGAGGTTCCAAATCGCTGCAGAGATAGCCACGGGCTTGCTTTTTCTTCACCAGACAAAACCAGAGCCGATTGTGCATCGTGACTTGAAACCGGGCAACATCTTGCTTGACCGTAACTATGTGAGCAAGATCGGTGATGTGGGGCTGGCCAGGCTTGTTCCTCCTTCGGTTGCAGACACCGTAACTCAGTACCGGGTGACATCAACTGCTGGAACTTTCTGTTACATTGACCCTGAGTACCAGCAAACAGGTATGCTCGGAATCAAGTCTGATGTTTACTCACTGGGGATCATGCTCCTGCAATTGGTAACGGCCAAGCCNCCAATGGGTTTGACTCATCATGTTGCAAGATCCATTGAGAAGGGAACCTTTGTTGAGATGCTTGACCCGGGCGTCNAGGACTGGCCAATTGATGAGACCTTGCATTTCGCCAAACTTTCCCTCCAATGTGCTGAAATGAGGAGAAAAGATAGACCTGACCTTGGGAAAGTTGTGTTACCAGAGCTTAATAAACTCAGGGCATTTGCTGAAGATAACATGCCTATGATGATCTTTAGGGGTANTGCAGGACTCAATCCCAGAAGTAGCAACCCTTCCACACATTCCACGGTTTCCACAACGCAAGACTTTATGAGTGAATCGCAATCNTTGTCCGGATACGAAAGCCGCTCAAGCACATCATCACTGGGGAGAATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01170	65554	69370	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.14.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0006950 response to stress

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001170s00029948.1	PF00582.21	Usp	14	137	3.90E-07
Glyur001170s00029948.1	PF00069.20	Pkinase	473	674	8.50E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.553
SRR1811619	moderate drought stress	0.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.044
DRR006520	Root Summer glycyrrhizin high producing strain	0.045
DRR006521	Root Winter glycyrrhizin high producing strain	0.093
DRR006522	Root Winter glycyrrhizin high producing strain	0.090
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.158
SRR2868004	Drought Stress (root)	0.160
SRR2967015	Control (root)	0.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.331
SRR9715740	Leaf	0.182
SRR9715741	Leaf	0.133
SRR9715739	Root	0.000
SRR9715742	Root	0.317
SRR9715743	Root	0.281

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.155
SRR8749028	MeJA induced 9h	0.073
SRR8749029	MeJA induced 9h	0.049
SRR8749030	Uninduced	0.094
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.258

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.263
SRR8400027	Control - Root	0.000