Gene detail

Gene detail information of Glyur001170s00029944

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35330.3	5.00E-71	methyl-CPG-binding domain protein 02
NR	XP_006583579.1	1.44E-159	PREDICTED: methyl-CpG-binding domain-containing protein 2 isoform X1 [Glycine max]
Swissprot	tr\|Q8LA53\|MBD2_ARATH	4.00E-88	Methyl-CpG-binding domain-containing protein 2
trEMBL	tr\|I1KJW5\|I1KJW5_SOYBN	5.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G15620.1}

Sequence

Transcript Sequence

>Glyur001170s00029944.1
TATGTANTGTTTTTTACGCTCGCAGTCCGATGCTTCACCTGTGTACAGTAAAAGGAGAAAAAAAAATATCATTTTGTTTTGTTATTGGGAGGAGACGCAGCGAGCGAGGAGGAGTAAAGGCAGGTTGGTGTGCAAAAACGAGACTTGTAAAATGAAATGAATCTAAGGAAGGAGAAGAAAACTGTGTGTGTGTCCTGGCTGTGTTATATAATATATAATATATAATATATATTATATGGTTAACACTTACATTTGAAGCGACAAATCAAAAGGAAGGATTACCCCATTAGAGGAGAGGAGAGGAGAGGAGAGGAGAAGAGAAGAAAGGCCTCATTCTCATTGGTCCGTTTGCGGAGGGAAGGGAGATCAAAGCCAGCCAAGCCAAATCTCTCTCTCTCTCTCTCTCTCTCTGCTTTCACAGCACAGGACCCTCCAATCCATTCACGTGCTAGACTTTTAGGAAAAACAGATGCATCGTGGTAAATTTTCNCTTACACCTAAGATTCAAGACAAGGACCTAACGGGTTCAAGTTTCCCTAGTTACCAACATAGTCCAGATCCCGTAAATGTTTCTTCTTCATCTTCAGATGATGAAAATAACCTGTCTAATGAGGATGTATCCAATCAATTAGTCCTTTATGACCCTGTGGCAAATGGAAACAACACAGTTGAACTTGTCCCTGATCCTCTTCAGTGTGAACCTCTATTGCATCCAAGAAGCAAACCTTCAAGTTCAGCTCCTAGAGTTTTGCCATCAGTTGGTGCTTTCACTGTTCAATGTGCATCTTGCTTTAAATGGAGGTTGATTCCAACAAAGGAGAAATATGAAGAAATACGCGAACATATCCTTGAACAGCCTTTTGTTTGTCAAAAAACTCGTGATTGGCGACCTGATGTATCTTGTGATGACCCAGAGGATATTTCTCAGGATGGCAGTAGGATTTGGGCTATTGATAAGCCAAACATTGCACAGCCTCCAGATGGGTGGCAGCGGCTGCTACGGATCAGAGGTGAAGGAAGCACCAAATTTGCAGATATATACTATTTAGCACCGTCCGGCAAGAGATTGCGCTCAATGGTAGAGATCCAGAAGTATGTTCCTGCTGCTTCTGCTTTGTTCTTGATGGATCATCCAGAATATACGAAAGATGGGGTAACTCTTTCACAGTTCTCATTTCAAACACCAAAGCCATTGCAAGAAAACTATGTGAGGAAGCGCCCTGCTAGACCTGAGGAAGTGAGTCCTCTAGCATGGGCAGGTCCAGAAGACNGTGCTAATTCACATGAGAGAAGATTGGGGCTTCCTGCTCCGTGCATGGGATCAGATGTTTCTACACCTATCAGCCGTCCGGCAAAGAAGCAAGCAAGTCAGAGATCCTTCCATAAAGATGACCTTTAGTNAGAAGAATATTAGCTCATAAGTTAAAACAGAAGGACCCTGATCAAATCTCTATATATCCTTTGGGTCAGTCTCCTCCTTTTTGCATTGCTTTTGAGTANAAGATTGCATCTTCCTTTGTAAGTTCTTACAAATAGATAATATATTTTCCTTTTGGATTTAAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01170	37380	40693	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001170s00029944.1	PF07496.10	zf-CW	100	151	9.90E-15
Glyur001170s00029944.1	PF01429.14	MBD	170	240	3.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.073
SRR1783600	control	10.389
SRR1783602	moderate drought stress	22.100
SRR1811619	moderate drought stress	22.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.519
DRR006520	Root Summer glycyrrhizin high producing strain	25.661
DRR006521	Root Winter glycyrrhizin high producing strain	65.244
DRR006522	Root Winter glycyrrhizin high producing strain	63.096
DRR006523	Root Summer glycyrrhizin low producing strain	42.932
DRR006524	Root Summer glycyrrhizin low producing strain	42.344
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.998
SRR2868004	Drought Stress (root)	30.179
SRR2967015	Control (root)	31.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.602
SRR9715740	Leaf	19.251
SRR9715741	Leaf	18.675
SRR9715739	Root	4.078
SRR9715742	Root	11.076
SRR9715743	Root	8.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.617
SRR8749028	MeJA induced 9h	33.016
SRR8749029	MeJA induced 9h	33.413
SRR8749030	Uninduced	24.022
SRR8749031	Uninduced	23.945
SRR8749032	Uninduced	31.999

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.462
SRR8400027	Control - Root	22.814