Gene detail information of Glyur001170s00029938 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10310.1 | 7.00E-116 | high-affinity K+ transporter 1 |
| NR | XP_004513109.1 | 0 | PREDICTED: sodium transporter HKT1-like isoform X1 [Cicer arietinum] |
| COG | YP_003827005.1 | 3.00E-06 | TrkH family potassium uptake protein [Acetohalobium arabaticum DSM 5501] |
| Swissprot | tr|Q84TI7|HKT1_ARATH | 2.00E-155 | Sodium transporter HKT1 |
| trEMBL | tr|I1KEI5|I1KEI5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G42340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01170 | 13295 | 20771 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001170s00029938.1 | PF02386.11 | TrkH | 204 | 414 | 5.30E-36 |
| Glyur001170s00029938.1 | PF02386.11 | TrkH | 426 | 535 | 1.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.147 |
| SRR1783600 | control | 11.322 |
| SRR1783602 | moderate drought stress | 10.540 |
| SRR1811619 | moderate drought stress | 10.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.559 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.695 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.772 |
| SRR2868004 | Drought Stress (root) | 59.637 |
| SRR2967015 | Control (root) | 30.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.686 |
| SRR9715740 | Leaf | 6.895 |
| SRR9715741 | Leaf | 5.319 |
| SRR9715739 | Root | 7.878 |
| SRR9715742 | Root | 13.243 |
| SRR9715743 | Root | 11.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.476 |
| SRR8400027 | Control - Root | 21.186 |