Gene detail information of Glyur001170s00029937 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10310.1 | 2.00E-105 | high-affinity K+ transporter 1 |
| NR | KEH27269.1 | 0 | high-affinity potassium transporter [Medicago truncatula] |
| COG | YP_002602905.1 | 8.00E-07 | protein TrkB [Desulfobacterium autotrophicum HRM2] |
| Swissprot | tr|Q6H501|HKT6_ORYSJ | 2.00E-158 | Probable cation transporter HKT6 |
| trEMBL | tr|A0A072UBQ8|A0A072UBQ8_MEDTR | 0 | High-affinity potassium transporter {ECO:0000313|EMBL:KEH27269.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01170 | 3024 | 7265 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001170s00029937.1 | PF02386.11 | TrkH | 219 | 553 | 1.10E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.110 |
| SRR1783600 | control | 1.047 |
| SRR1783602 | moderate drought stress | 1.336 |
| SRR1811619 | moderate drought stress | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.744 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.705 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.697 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.418 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.249 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.990 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.052 |
| SRR2868004 | Drought Stress (root) | 34.951 |
| SRR2967015 | Control (root) | 15.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.751 |
| SRR9715740 | Leaf | 0.397 |
| SRR9715741 | Leaf | 0.931 |
| SRR9715739 | Root | 3.011 |
| SRR9715742 | Root | 12.466 |
| SRR9715743 | Root | 10.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.766 |
| SRR8749028 | MeJA induced 9h | 2.042 |
| SRR8749029 | MeJA induced 9h | 0.194 |
| SRR8749030 | Uninduced | 0.738 |
| SRR8749031 | Uninduced | 0.139 |
| SRR8749032 | Uninduced | 0.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.843 |
| SRR8400027 | Control - Root | 4.070 |