Gene detail

Gene detail information of Glyur001167s00034013.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14220.1	1.00E-36	Flavin containing amine oxidoreductase family
NR	NP_001236376.1	2.96E-70	protoporphyrinogen IX oxidase [Glycine max]
COG	YP_004151624.1	4.00E-17	protoporphyrinogen oxidase [Thermovibrio ammonificans HB-1]
Swissprot	tr\|Q94IG7\|PPOCM_SPIOL	2.00E-48	Protoporphyrinogen oxidase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7MXD0\|K7MXD0_SOYBN	1.00E-71	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G25100.2}

Sequence

Transcript Sequence

>Glyur001167s00034013.1
CTCGTCAAGTCTCTCTCGATTAAAAACCCCGGCACGAGACTGAAACATTTCGTCCTGAAGTTGTCTCAGAGATGGCCTCCTCTGCAAAAGATGACAACCCAAGATCTGTAAAAAGAGTCGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTGGATGTAACTGTATTTGAAGCTGAAGGAAGAGCTGGAGGGAGGTTAAGAACTGTTTCTCAAGATGGTCTAGTTTGGGACGAGGGAGCTAATACAATGATTGATTTTTTGATTCTTCATTACTTGGTGATAATTGTTTCTTATGAGCAAGGTGAAGTTAATGTGTGCCTCAACTATGAGAGGTTAAAGCCACTTTCACAGCACAAGCGCTATATTGTGAAAAACGGGACACCACTTCTGGTACCTGCAAATCCTGCTGCACTACTGAAGAGCACACTGCTTTCTGCACAATCAAAGACTGAAAGTGAAATGGAGGTGAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAGCAACAATTTCCACTTTCACAGCACAAGCGCTATATTGTGAAAAACGGGACACCACTTCTGGTACCTGCAAATCCTGCTGCACTACTGAAGAGCACACTGCTTTCTGCACAATCAAAGATCCAGCTCATTTTTGAACCATTTATGTGGAAAAGAAATGACCCCTCTACTGTGTGTGATGAAAATTCCGAGGAAAGTGTTGGCAGGTTCTTTGAACGTCATTTTGGGAAAGAGGTTGTGGATTATCTCATTGATCCGTTTGTTGGAGGCACAAGTGCAGCAGATCCTGAATCTCTTTCTGTGAGNTAATTCTCAAAATTTTAAATATTTTCTACAATATTTTATATTTCATGCTTTTAAGTATGACTTTTGATTGTATTCAGATTGCTTAATCATATAAAATGTTAATCATAATATGACCAACACAGTACACTGACCTAACAGGTTACTGAGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01167	74750	83368	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00231	PPOX, hemY	EC:1.3.3.4 1.3.3.15	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001167s00034013.1	PF01593.19	Amino_oxidase	23	70	3.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.471
SRR1783600	control	8.491
SRR1783602	moderate drought stress	8.238
SRR1811619	moderate drought stress	7.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.174
DRR006520	Root Summer glycyrrhizin high producing strain	11.535
DRR006521	Root Winter glycyrrhizin high producing strain	9.603
DRR006522	Root Winter glycyrrhizin high producing strain	8.189
DRR006523	Root Summer glycyrrhizin low producing strain	14.558
DRR006524	Root Summer glycyrrhizin low producing strain	16.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.022
SRR2868004	Drought Stress (root)	20.235
SRR2967015	Control (root)	19.965

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.905
SRR9715740	Leaf	6.305
SRR9715741	Leaf	6.698
SRR9715739	Root	3.410
SRR9715742	Root	9.005
SRR9715743	Root	7.729

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.960
SRR8749028	MeJA induced 9h	30.268
SRR8749029	MeJA induced 9h	15.201
SRR8749030	Uninduced	10.432
SRR8749031	Uninduced	15.099
SRR8749032	Uninduced	8.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.451
SRR8400027	Control - Root	23.459