Gene detail information of Glyur001166s00031663 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36880.2 | 0 | methionine adenosyltransferase 3 |
| NR | KEH42171.1 | 0 | S-adenosylmethionine synthase-like protein [Medicago truncatula] |
| COG | YP_008801702.1 | 4.00E-159 | S-adenosylmethionine synthetase [Exiguobacterium sp. MH3] |
| Swissprot | tr|Q6SYB9|METK2_TOBAC | 0 | S-adenosylmethionine synthase 2 |
| trEMBL | tr|A0A072VKL5|A0A072VKL5_MEDTR | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01166 | 79403 | 82850 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00789 | metK | EC:2.5.1.6 | Biosynthesis of amino acids | map01230 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001166s00031663.1 | PF00438.15 | S-AdoMet_synt_N | 3 | 101 | 3.40E-42 |
| Glyur001166s00031663.1 | PF02772.11 | S-AdoMet_synt_M | 116 | 238 | 2.60E-49 |
| Glyur001166s00031663.1 | PF02773.11 | S-AdoMet_synt_C | 240 | 382 | 2.10E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.943 |
| SRR1783600 | control | 3.820 |
| SRR1783602 | moderate drought stress | 3.893 |
| SRR1811619 | moderate drought stress | 3.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.697 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.468 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.587 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.662 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.661 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.282 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.020 |
| SRR2868004 | Drought Stress (root) | 8.966 |
| SRR2967015 | Control (root) | 9.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.107 |
| SRR9715740 | Leaf | 5.722 |
| SRR9715741 | Leaf | 2.700 |
| SRR9715739 | Root | 3.202 |
| SRR9715742 | Root | 2.852 |
| SRR9715743 | Root | 3.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.180 |
| SRR8749028 | MeJA induced 9h | 3.390 |
| SRR8749029 | MeJA induced 9h | 3.970 |
| SRR8749030 | Uninduced | 0.945 |
| SRR8749031 | Uninduced | 0.596 |
| SRR8749032 | Uninduced | 1.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.839 |
| SRR8400027 | Control - Root | 10.057 |