Gene detail

Gene detail information of Glyur001166s00031657.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57620.1	2.00E-62	myb domain protein 36
NR	XP_007162775.1	2.15E-131	hypothetical protein PHAVU_001G179400g [Phaseolus vulgaris]
Swissprot	tr\|Q9M2Y9\|RAX3_ARATH	7.00E-70	Transcription factor RAX3
trEMBL	tr\|V7CXD7\|V7CXD7_PHAVU	8.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:ESW34769.1}

Sequence

Transcript Sequence

>Glyur001166s00031657.1
CTCCAAAGTTTTGTCTGGTTCTCATGCTGAAAATTAATTAAAAGGCCAAAAATATCTCTCTGGCTGGCTCAGACAAACTAGTCACTGATCAATTCTCAAGGAGCCTTTGTAGTTCCATCAAAGTTTCCATACATCAAAATATTAAGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTCAAGAGAATTAAGAGATGGGGAGGGCTCCTTGTTGTGACAAAGCAAATGTAAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAATACATGGACAAACATGGGACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGGCTCAGATGGCTTAATTATCTCAGACCCAACATTAAACATGGAGAGTTTTCTGAAGATGAAGATAGAATAATCTGCAGTCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCTTCTCAGTTGCCTGGTAGAACTGACAATGACATCAAGAATTACTGGAACACAAAGCTCAAGAAAAAGATGATGGACATGAATCCTTCAACAGCACTAAAGAAACCTCACCNAGTTACCCTTTTATCCATCCTTGAAAATTCANCACCATCTTCACCACCATCATCATTCAGAGACAGCCACAACAACAACTACCACAATCTGTCTTTCACAGGCTCTGAGTCCATTTCAAGTCTTATGAGTTGCAATTCCTCTAGTTCTACTACCTCTGCCAATTCCATTTTTCAAGCACAAGAGAGTTTCTTGGTGGGGCCCTTTAAGAATTACCAAGTTAATAGTAGTGGTTTTATGTTTGGGGGTGAAGCTAGTTGTAGCTCTTCTGATGGAAGCTGCAACNACCAGGTCAAAGAAGCAGAACTTGGATATGGATCAGTTGATGGAACTTTTGCTGACCATGCAGGTGTTGTTGATTACCTCTACAGTGGGGTGGAAGATACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGGTAGTGGGTGGACAGTGGAACAAAGTAGTAGATTATGGGAAGAAAATCCATCAGATTATGGTCTAGAAGAAATTAAACAGCTTATAAGCACTACTAGTAGTTGCACCAACTTTTTGTTTGATGAATACATGACAGAGGAGAGGGTCATGTGGTCAATAATAGCTTCTCAGTTGCCTGGTAGAACTGACAATGACATCAAGAATTACTGGAACACAAAGCTCAAGAAAAAGATTATGGGCATGAATCCTTCAACAGCACTAAAGAAACCTCACCNAGTTACCCTTTTATCCATCCTTGAAAATTCANCACCATCTTCACCACCATCATCATTCAGAGACAGCCACAACAACAACTACCACAATCTGTCTTTCACAGGCTCTGAGTCCATTTCAAGTCTTATGAGTTGCAATTCCTCTAGTTCTACTACCTCTGCCAATTCCATTTTTCAAGCACAAGAGAGTTTCTTGGTGGGGCCCTTTAAGAATTACCAAGTTAATAGTAGTGGTTTTATGTTTGGGGGTGAAGCTAGTTGTAGCTCTTCTGATGGAAGCTGCAACAACCAGGTCAAAGAAGCAGAACTTGGATATGGATCAGTTGATGGAACTTTTGCTGACCATGCAGGTGTTGTTGATTACCTCTACAGTGGGGTGGAAGATACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGGTAGTGGGTGGACAGTGGAACAAAGTAGTAGATTATGGGAAGAAAATCCATCAGATTATGGTCTAGAAGAAATTAAACAGCTTATAAGCACTACTAGTAGTTGCACCAACTTTTTGTTTGATGAATACATGACAGAGGAGAGGGTATTATTATCCCCACCATCTCAACCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01166	41289	53427	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001166s00031657.1	PF00249.26	Myb_DNA-binding	14	62	7.80E-14
Glyur001166s00031657.1	PF00249.26	Myb_DNA-binding	69	111	1.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.626
SRR1783600	control	9.774
SRR1783602	moderate drought stress	15.912
SRR1811619	moderate drought stress	15.975

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.757
DRR006520	Root Summer glycyrrhizin high producing strain	2.560
DRR006521	Root Winter glycyrrhizin high producing strain	2.355
DRR006522	Root Winter glycyrrhizin high producing strain	2.239
DRR006523	Root Summer glycyrrhizin low producing strain	2.872
DRR006524	Root Summer glycyrrhizin low producing strain	2.529
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.248
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.322
SRR2868004	Drought Stress (root)	14.625
SRR2967015	Control (root)	21.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.545
SRR9715740	Leaf	0.969
SRR9715741	Leaf	0.779
SRR9715739	Root	2.023
SRR9715742	Root	3.236
SRR9715743	Root	2.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.295
SRR8749028	MeJA induced 9h	31.541
SRR8749029	MeJA induced 9h	18.657
SRR8749030	Uninduced	6.166
SRR8749031	Uninduced	5.101
SRR8749032	Uninduced	9.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.072
SRR8400027	Control - Root	12.087