Gene detail

Gene detail information of Glyur001165s00032786

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35530.1	0	DEAD/DEAH box RNA helicase family protein
NR	XP_004506415.1	0	PREDICTED: Fanconi anemia group M protein homolog [Cicer arietinum]
COG	NP_579744.1	7.00E-72	Hef nuclease [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|P84634\|DCL4_ARATH	4.00E-14	Dicer-like protein 4
trEMBL	tr\|K7L8H5\|K7L8H5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G25971.1}

Sequence

Transcript Sequence

>Glyur001165s00032786.1
TAAACAAAAATCCGAAATCATTATTTATTATCGAAAATGACATCCAATAATCCCTATGAGATCATGGACGATGAGGAGGGGTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAAATGACCAGTGAAGCAAACTCAAAGGGAAATGAAAATGAAANGGGAAAGGGAAAGGGAAAGGGAAAGGAAAAGCAATCGACTCTCGATAAGTTCGTGGGAATTGCAAAGAAGGAAACCCCAACGCCTCAGTTCCAAGAAGATGTCGCCGAAGGCCCTACCACCTGCACCCACCAAATTGACACTGAAGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTTCGCGACTATCAATTCAATATTGCCCAGTCCGCACTCTTTCAAAACACATTGGTGGCCTTGCCAACAGGACTTGGCAAAACACTTATTGCTGCGGTTGTCATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTGGGGATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCGTTTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAGGACATTCATTCTGGTAGATGTTTGGTGAAGTACTTGGTTTGTTTGGTGATTGATGAAGCACACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTGCAACTGAGAATATTAGCGTTAAGTGCAACACCAGGATCAAAGAGGCAGACAGTCCAAGATGTTATTGATAATCTGCATATCTCCAAGCTTGAATATCGCAGTGAAACTGACCACGACGTTATCTCATATATTCACAATAGGAAAATAGAGCTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAATAACAAGTTTTTGGAAGTGATACGCCCTATAGTAGCCAGGCTTACAAATATTGGAGTCATTCAGAATAGAGATTATCGCACTTTGAGCCCCTGTGCATTACTTGAAATAAGGGAAAAGTTTCGTCAGGGTCACATGCAAGATCCTTCTCATGTGAACTATGATGATGTTGAAGGTTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAACTGCTTTCAAGTCATGGAATAAGGCCAGCACATGAGATGCTCGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATTTATGAGTAAAAACGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCACGGAGCATCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAGACCAATGATCCACAAAACTCCAGGGTAATAATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGATGCACTTGGAGGTACTGGGGATCTCGTCAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAACAACGAAAGGTCAATCCCAAAAAGTTCAACAGGCTGTGCTAAAGAAATTTCGGTCTGGTGCCTACAATGTCATCGTTGCTACATCAATNGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCCTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAATTCCCCACATCCTTAAGCCAGAAGTTCAATATGTTGAGCTGTCTATTGAGAAATTTATTCCTCGTCAAAAGAATGTGAAAGATGACCATCTTCAAATTTCTCTTTCGAAGGACAAACTCACTGTTGCTGAAATTGATTTACTTGAAAATTATTTTCGTCCTACTGGGGAAAATAAGTGTAGATTGTCTCTTATTGCCTTTCCCCACTTTCAGACATTTCCTTCTAGAGTGCACAAAGTGAAGCATTCCTTTGGAACATTGATGTTTATAGACACAATGCAGCATTTGCAAGGACTAACAGCATTTCCAGGAGATGGCAAAACTTCAACTCTTCAGGAAGGTCAGTGTATAGGAAATAGTAAGCCAGTTGCCACCACCGAGCTTGATGAAGCTAAAAAGGATAATGAACCATGCTGTAGGCATACAATGGGAATGAATGTAGTCTCTGCAAATTGTCTGGAGCTGGATTCCTGTCATTTGAGGATTCATAACAAAGACTTTGTTGATCCAACTCTACAAGATGGTACTTTCTGTGGCATGGGTAAGCATCAAGAGGAAACATGTGAGGGTGATGAGACAATTCCTGAGACTCCAATTGCTAAGAGAAATGTGTCAAATGAAGGAGCTAATGCTGGTGAAACTGTTGAGATCGAGACTTCTGCAGATGCATGCATTAATAGCGTGAGAGATGAAGAACTTAGTCCTCGTTTAACTAATTTTATTGAAAGTGGTGTTGTTCCCGAGTCTCCCATTGATGAAAGAGGGCAATCAAGAAACAAGTATGTCATTCGAGACTGTATTTCACCTGTTCATCTCCTGGAAGAAAAGGATGTTAGTTCTTTGAGTTCTAGAGAAATTGAAAAGGCCACCATTGATANTGGCACTGGTAAGAATGTAAGTATTTCTCCTGTCAATGACACTCAAAGCCCTTTGCTTGAGCTGAAGAATTGTGCAATTAGAAGAGGACGCGTCTTCCTTTCTCCAATTGAGGAAGGCCATACACTTATTGCAGACCCAAGCCTCAATGAAGAATCGCCTTCAGGCTGTGGTGAAATGTCTGTAGGCATTAAACCTGCACGCAAATTTAAAAGGTTGAGGAAAGTTGAAGATAGTGAAAGTAATATGAATCAGAAAAGCAATGTTGTTTTTGATTCAACTGGAAACTTTTTCAAATCATCTTCTGCCTCCAATCCCACACGATATAAGCATGTTCAAGGTAAAAGGAAACCTACACATGATGCGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCGANGTATCTAATGATGAAGATGATGAGGATGGCAATTCAGTTGACAGTTTCATAGATGACCGAACCAACCCTACAGCGGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCAATCAATGGAGGGCTCAATTTTCCTACCATCTTCAGTCCTGACAATGGGACTATGACAGCCAGTATTGGTGGAAGTGGTGATTCATCATGCAAGACAGTGAGTCATTTCCAGACAACAGGACCCACGACTCAGTCCGCTAATCAGACTTCGGAATCGGTTCGTATGGATCAGATAACCTCAGCAGCAGCAGTGCCTTCAACTGGTTCCCCTACAGGAACCAGGGCGGCAGAGGTAAGAAGTCATAAAAGAAGATTGTCATTCTATCATTCTGGACACTTTCCAAGTATGAATCTTGAACAACAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATGCCAATACAACTATAGATGTTATATGTGATGATGATTTTTATAACGATGTTGATCTTGACGAGTTGGAGGCACAAGCAACATCACTTCTAAAAGGGAAACTAGATTTGTCAATTCAGAAGCAAGATACAATCCCTCANTCTCACTCACCGAACCTTGATGTCATTATGTCTCCAACATTTGATCTTGGTATATGAAAAGCAC

Protein Sequence

>Glyur001165s00032786.1
MTSNNPYEIMDDEEGFDWEAAAREIDVVCQMTSEANSKGNENEXGKGKGKGKEKQSTLDKFVGIAKKETPTPQFQEDVAEGPTTCTHQIDTEAAKTWIYPVNVPLRDYQFNIAQSALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRARFWKTKRVFFVTPQVLEKDIHSGRCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALSATPGSKRQTVQDVIDNLHISKLEYRSETDHDVISYIHNRKIELIQVAMGQDAVEINNKFLEVIRPIVARLTNIGVIQNRDYRTLSPCALLEIREKFRQGHMQDPSHVNYDDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKFMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMDALGGTGDLVRATQFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSXGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHILKPEVQYVELSIEKFIPRQKNVKDDHLQISLSKDKLTVAEIDLLENYFRPTGENKCRLSLIAFPHFQTFPSRVHKVKHSFGTLMFIDTMQHLQGLTAFPGDGKTSTLQEGQCIGNSKPVATTELDEAKKDNEPCCRHTMGMNVVSANCLELDSCHLRIHNKDFVDPTLQDGTFCGMGKHQEETCEGDETIPETPIAKRNVSNEGANAGETVEIETSADACINSVRDEELSPRLTNFIESGVVPESPIDERGQSRNKYVIRDCISPVHLLEEKDVSSLSSREIEKATIDXGTGKNVSISPVNDTQSPLLELKNCAIRRGRVFLSPIEEGHTLIADPSLNEESPSGCGEMSVGIKPARKFKRLRKVEDSESNMNQKSNVVFDSTGNFFKSSSASNPTRYKHVQGKRKPTHDARDFIEEEAEVSSDAXVSNDEDDEDGNSVDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQTPINGGLNFPTIFSPDNGTMTASIGGSGDSSCKTVSHFQTTGPTTQSANQTSESVRMDQITSAAAVPSTGSPTGTRAAEVRSHKRRLSFYHSGHFPSMNLEQQFALQSKKESVNANTTIDVICDDDFYNDVDLDELEAQATSLLKGKLDLSIQKQDTIPXSHSPNLDVIMSPTFDLGI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01165	42166	53124	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001165s00032786.1	PF00270.24	DEAD	112	264	1.30E-16
Glyur001165s00032786.1	PF00271.26	Helicase_C	497	561	7.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.813
SRR1783600	control	0.864
SRR1783602	moderate drought stress	0.724
SRR1811619	moderate drought stress	0.721

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.215
DRR006520	Root Summer glycyrrhizin high producing strain	1.235
DRR006521	Root Winter glycyrrhizin high producing strain	0.328
DRR006522	Root Winter glycyrrhizin high producing strain	0.323
DRR006523	Root Summer glycyrrhizin low producing strain	1.125
DRR006524	Root Summer glycyrrhizin low producing strain	0.976
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.325

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.459
SRR2868004	Drought Stress (root)	2.046
SRR2967015	Control (root)	2.223

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.769
SRR9715740	Leaf	0.394
SRR9715741	Leaf	0.380
SRR9715739	Root	0.013
SRR9715742	Root	0.510
SRR9715743	Root	0.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.556
SRR8749028	MeJA induced 9h	2.894
SRR8749029	MeJA induced 9h	1.647
SRR8749030	Uninduced	0.681
SRR8749031	Uninduced	0.181
SRR8749032	Uninduced	0.352

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.900
SRR8400027	Control - Root	1.993