Gene detail

Gene detail information of Glyur001165s00032785

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20230.1	3.00E-60	Ribosomal L18p/L5e family protein
NR	XP_004506409.1	1.55E-89	PREDICTED: 50S ribosomal protein L18-like [Cicer arietinum]
COG	YP_159199.1	5.00E-11	50S ribosomal protein L18 [Aromatoleum aromaticum EbN1]
trEMBL	tr\|I3SRZ1\|I3SRZ1_LOTJA	3.00E-86	Uncharacterized protein {ECO:0000313\|EMBL:AFK43033.1}

Sequence

Transcript Sequence

>Glyur001165s00032785.1
AGTAGTGATGATGATAAGTAAGTAATAAAAAGGTGGTTCACCCACACAGGAGGCGGAAATGAAAAAGAAGTGAGAAAAAGAAGAAGGAGAAGAGGAGGAGGAGGAGGAGGATGGGTTGTGTTGCTGCTTCGCCAACTGTATGTGTCTCTCAGCCTCAGCAACGCCAATTACAGCCATCGCGCACGCCGAAGCCCAATACTTCGCTTTCATTATCGTGGCTTTCTTCATTTCCCTCTCTCACCTTTTCTGCTCCCTCTCTCGCACCAACCCTCCCAATCCCACCAACGGTTCTTTCATTCGAGCTGCCTGGACCCGAAGATCTCGNGGCGAAGCTGAAAAGAAACCAAACAGGAAATCATGGAAGCAGAGGACAGATATGTACATGAGACCATTCTTGTTAGATGTTTTCTTCTCAAAGAGATTTGTTCACGCAAAAGTGATGCACCGAGGAACAAGCAAAGTGATATGTGTTGCTACCACAAACGCCAAGGATCTCCGGAACTCTCTTCCATCCTTGACNGATCACGAAGCCTGTAGAGTAATTGGAAGGCTCATTGCAGAGCGATCAAAGGATGCTGATGTATATGCAATGGCATATGAACCCAGAAAGAATGAAAGGATTGAAGGTAGACTAGGAATCATTCTTGATACTATTAAAGAAAACGGGATTATTTTTGTTTGAGCCCATTAGCCTCCATTTTTTGGTATAGACTCTTAGTTTAATCCAAGTCGAGTCGGGTGAAACTATATGAGGGGGAAAAGTTCTCCCGACTTCTATTTTCTCCATTTACAAGACTCTAACACAAGACCTTGTTTAAGGAGAACCAAACTCTTTGCCACTTGGATCAACAAGCACTAGTTAGCTATACCCTCCTTGTATGGGTTGTTTGTTACAATTCTTATTTGATTGTTTATGTATCTTTTGTGCATTAATTTGCTCCTTGGTGAATTAGATTCTTGTGGTTTTGTGTTGGGTTTTCTTGGTGGCGGTGGGTGGCANATTTGATTGTTAATCTAGTTGTTTTATTACACTATGGTAGGGAGGGAGAGGTGTTTAAGGTTGAAGATAATTGTTTTAANTTTCTAGGAATTTGCGTGTGTTAACCATAAATACCCACAAATGATTTGTTTTTTGTCCAAAGATAAGAATGTGAGACATGTCTCAAGTCTCAACACATCCCGTGGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01165	29934	32368	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001165s00032785.1	PF00861.17	Ribosomal_L18p	75	177	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.463
SRR1783600	control	9.488
SRR1783602	moderate drought stress	6.918
SRR1811619	moderate drought stress	5.885

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.652
DRR006520	Root Summer glycyrrhizin high producing strain	12.104
DRR006521	Root Winter glycyrrhizin high producing strain	20.641
DRR006522	Root Winter glycyrrhizin high producing strain	19.059
DRR006523	Root Summer glycyrrhizin low producing strain	10.500
DRR006524	Root Summer glycyrrhizin low producing strain	10.028
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.619

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.829
SRR2868004	Drought Stress (root)	13.685
SRR2967015	Control (root)	16.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.236
SRR9715740	Leaf	25.133
SRR9715741	Leaf	18.240
SRR9715739	Root	4.805
SRR9715742	Root	4.100
SRR9715743	Root	4.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.283
SRR8749028	MeJA induced 9h	29.511
SRR8749029	MeJA induced 9h	36.767
SRR8749030	Uninduced	30.244
SRR8749031	Uninduced	36.754
SRR8749032	Uninduced	38.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.042
SRR8400027	Control - Root	13.890