Gene detail

Gene detail information of Glyur001165s00032783

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22850.1	4.00E-45	SNARE associated Golgi protein family
NR	XP_004506407.1	8.67E-138	PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like isoform X1 [Cicer arietinum]
COG	NP_869843.1	4.00E-34	hypothetical protein RB11207 [Rhodopirellula baltica SH 1]
trEMBL	tr\|I3S6F5\|I3S6F5_LOTJA	2.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:AFK35847.1}

Sequence

Transcript Sequence

>Glyur001165s00032783.1
TGATGATATGGGTACATGACAGTTCCACGCTGCGAGTCGTGAGAGTGAGAGAGAAGAAAGAGAGAGAGGAAGAGGGAGTTTCTTCTTTCATGAATAATCCATTCCGTTGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGAGTTGAGTTGAGTTGAACAACTTGATAGATAATAATCTTCACCACATCAACATTCGTATGGTATAATGCGCACCCTTCCATTACCATGCGTCTCTTCTTCTCTTCACATACACACCAACAACACCTTTGGCTTCTTCTCTCCACCTTCTTCTTCTTCGTTTATCTTCACACCCTCACACCATAAACGCATTCACTTCATAACCCCATGCTCTTCCCTCAAACAGACCAAAAAACAACGGCAACAACTGAGCAAGATCAACACTGCCCCATCAGGGATAAAGCGCTTGTTTAGCCCCAAAAACGATGATGGGGACAACAAGAACGAGAACGAACCTGACTCTGACTCGGAGGATGGCACTGCTTTGAAGGGTACCCTTTTGGCTGGTGTGTTGCTGGTTGGTATTGTTGGGGGTTTTGCCTTTGTTGGGTATATCTATAGGGACCCCATCAATTCCTTCTTGAACCAGCTCTCCGCCTTCATTGAAGATCCTTGCAATTCCCGCCATTCCTTTAACCATGTTGCTGCAAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGCATTCTAAAACTAGTTGAGGGAAATAAAAAGTTTCTTGCTATTGACAAAGCAATTGGAGAAAATGGCTTCAAGGTTGTGACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCTTTGGGCAATTATTTATATGGATTGACATCTGTTAAGTTTATTCCATATGTATTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCAGGTGCTTTCGGAAGAGCAATAATTCAAGAAGAATCTGAACTTGCTGCATTAGGAGGAAACAATCAGCTGCTGACGCTTGGGCTGGGCCTGTTGGCCACTGCATTAGCTGCTACATATGTCACACGACTTGCAAAGGATGCAATAAAAGACATCGAATAGAACCATTAGAGAGTAGAGAAGACAACCCAACATTTGCAACGAAGACAAGTCCATGTGACTTGACTGGATTGGGAAACTGATATCTCAGTAAATAAATATCAACAACGATAGATGGAAGAGAACCAAGGAAAATGATAGACCCGGGCATGTCCCTTGTAAATTGCAATATTCTTATTGATGAAACACTGGCAAGGGACAATTCACATTTTATATAACTTTGACCAATATGTTTCTCTACCCATCGACAACAATGGGAATTCACAAATGCAATGGGTAAAGAAAGGGTTTTGGTAAATACACCATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01165	19896	28051	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001165s00032783.1	PF09335.6	SNARE_assoc	152	242	2.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.523
SRR1783600	control	24.380
SRR1783602	moderate drought stress	27.424
SRR1811619	moderate drought stress	26.769

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.914
DRR006520	Root Summer glycyrrhizin high producing strain	21.100
DRR006521	Root Winter glycyrrhizin high producing strain	9.193
DRR006522	Root Winter glycyrrhizin high producing strain	9.221
DRR006523	Root Summer glycyrrhizin low producing strain	17.610
DRR006524	Root Summer glycyrrhizin low producing strain	16.963
DRR006525	Leaf Summer glycyrrhizin high producing strain	97.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	96.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.424
SRR2868004	Drought Stress (root)	15.717
SRR2967015	Control (root)	13.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	101.500
SRR9715740	Leaf	140.192
SRR9715741	Leaf	95.305
SRR9715739	Root	6.714
SRR9715742	Root	12.214
SRR9715743	Root	11.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.895
SRR8749028	MeJA induced 9h	19.898
SRR8749029	MeJA induced 9h	32.535
SRR8749030	Uninduced	13.266
SRR8749031	Uninduced	12.500
SRR8749032	Uninduced	11.943

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.335
SRR8400027	Control - Root	17.556