Gene detail

Gene detail information of Glyur001164s00033513.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08650.1	8.00E-94	phosphoenolpyruvate carboxylase kinase 1
NR	XP_004495570.1	3.81E-177	PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Cicer arietinum]
COG	YP_006921214.1	2.00E-37	serine/threonine-protein kinase Sps [Thermacetogenium phaeum DSM 12270]
Swissprot	tr\|Q9SPK4\|PPCK1_ARATH	5.00E-123	Phosphoenolpyruvate carboxylase kinase 1
trEMBL	tr\|V7BDU8\|V7BDU8_PHAVU	8.00E-174	Uncharacterized protein {ECO:0000313\|EMBL:ESW16002.1}

Sequence

Transcript Sequence

>Glyur001164s00033513.1
ATTTCCAGTGGTAGTATCCACCGAACGAATATTCCCTTTCTATATGCCACTCCACATTCCGTCACTTTCCAATTTTCTCCCCTTCACCCCCCCAACACACCCACTCACACACTCCACGCCCGGTTATTTTCTAGTCTAATTCCCTTCCTATAAAAACAGAGTAACCGAAGCACAACGCAAACGACGCAGAAAACAGAAAGAGAAAGAAAGAGAAAGAGAGAAAAGGAAATGTGCGAAGCCCTAAAGACGCAGTACCAGGTGTGCGACGAGATCGGTCGCGGCCGTTTCGGCACCATCTTCCGCTGCTTCCACCAAACCTCCGACGAATCCTTCGCCTGCAAGGTCATCGACAAGTCCCTCCTCTCCGATTCCACCGATCGCGAGTGCCTCCAAAACGAGCCCAAGTACATGTCCCTCCTCTCCCCTCACCCTAACATCCTTCAAATCTTCGACGTCTTCGAAAACGACGACGTTTTATCCATCGTAATGGAGCTCTGCCAGCCCCTCACACTCCTCGACCGTATCGCCTCCAACAACCACCCTCTCTCGGAGCCACAGGCGGCATCGCTCATCAAACAGCTCCTCGAGGCCGTCGCACACTGCCACCGCCTCGGCGTCGCACACCGTGACATCAAACCCGACAACGTCCTCTTCGACTCCAACGACAACCTCAAGCTCGCCGACTTCGGCTCCGCCGAGTGGTTCGGCGGCGACGGGAGTTCCATGAGCGGTGTCGTTGGGACGCCGTACTACGTGGCTCCGGAGGTTCTGATGGGAAGGGAATACGACGAGAAGGTTGACGTGTGGAGCTGCGGCGTGATTCTGTACATAATGTTGAGCGGGATTCCGCCGTTTTACGGAGATTCCGCGGAAGAGATCTTCGATGCCGTTATTAGGGCAAATCTCAGGTTTCCTTCTAGAATCTTCCGATCCGTTTCCCCAGCCGCCAAGGACCTCCTGCGCAAAATGATCTGCAGAGACGCTTCTAGAAGATTCTCCGCAGAACAGGCCTTGAGGCACCCGTGGATCTTGAGTGGAGGTGACACNTCTAACCTCACTTGAATAGTAGTAGTAAATATAGTGTATAAGAGGAGAGACTTCACTTTGAGCTACTTGTTGCTGAGTGTAGCTAATTTTGCCATTTCTCTACTACTNTCACTGTGTGGATGATGAAGTCTACTACTACCAGAGGCAGAGGAAACAGAGCATGCTGCTGCTGTGTAAATTCTGATGATGCCCATGCAACTAGATTTTTCCTTTTTTTTTAAATACTTCCTTGGTTTTAGGAATCTGAGACTCTAGATGAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01164	78977	80482	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001164s00033513.1	PF00069.20	Pkinase	9	267	1.30E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.292
SRR1783600	control	34.518
SRR1783602	moderate drought stress	26.616
SRR1811619	moderate drought stress	26.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.500
DRR006520	Root Summer glycyrrhizin high producing strain	23.381
DRR006521	Root Winter glycyrrhizin high producing strain	2.982
DRR006522	Root Winter glycyrrhizin high producing strain	2.903
DRR006523	Root Summer glycyrrhizin low producing strain	18.114
DRR006524	Root Summer glycyrrhizin low producing strain	18.307
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.679

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.473
SRR2868004	Drought Stress (root)	62.799
SRR2967015	Control (root)	75.571

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.520
SRR9715740	Leaf	2.525
SRR9715741	Leaf	3.162
SRR9715739	Root	9.634
SRR9715742	Root	11.934
SRR9715743	Root	10.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.542
SRR8749028	MeJA induced 9h	0.102
SRR8749029	MeJA induced 9h	0.093
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.818
SRR8400027	Control - Root	72.668