Gene detail information of Glyur001164s00033510 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04760.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_003590960.1 | 0 | Pentatricopeptide repeat-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9SR00|PP213_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g04760, chloroplastic (Precursor) |
| trEMBL | tr|G7I6A4|G7I6A4_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES61211.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01164 | 63850 | 65646 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001164s00033510.1 | PF13041.1 | PPR_2 | 150 | 198 | 2.10E-19 |
| Glyur001164s00033510.1 | PF12854.2 | PPR_1 | 217 | 248 | 5.00E-07 |
| Glyur001164s00033510.1 | PF12854.2 | PPR_1 | 251 | 280 | 2.70E-11 |
| Glyur001164s00033510.1 | PF01535.15 | PPR | 294 | 323 | 0.00022 |
| Glyur001164s00033510.1 | PF13041.1 | PPR_2 | 325 | 374 | 4.60E-15 |
| Glyur001164s00033510.1 | PF13041.1 | PPR_2 | 395 | 442 | 1.80E-11 |
| Glyur001164s00033510.1 | PF12854.2 | PPR_1 | 461 | 493 | 2.50E-13 |
| Glyur001164s00033510.1 | PF13041.1 | PPR_2 | 504 | 550 | 1.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.487 |
| SRR1783600 | control | 1.425 |
| SRR1783602 | moderate drought stress | 1.055 |
| SRR1811619 | moderate drought stress | 1.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.441 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.697 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.226 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.828 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.754 |
| SRR2868004 | Drought Stress (root) | 3.298 |
| SRR2967015 | Control (root) | 3.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.425 |
| SRR9715740 | Leaf | 9.589 |
| SRR9715741 | Leaf | 3.201 |
| SRR9715739 | Root | 1.785 |
| SRR9715742 | Root | 1.742 |
| SRR9715743 | Root | 1.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.313 |
| SRR8749028 | MeJA induced 9h | 1.919 |
| SRR8749029 | MeJA induced 9h | 0.565 |
| SRR8749030 | Uninduced | 0.725 |
| SRR8749031 | Uninduced | 0.853 |
| SRR8749032 | Uninduced | 0.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.146 |
| SRR8400027 | Control - Root | 2.575 |