Gene detail information of Glyur001164s00033509 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08610.1 | 2.00E-159 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003555569.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FRS4|PPR22_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g08610 |
| trEMBL | tr|K7N504|K7N504_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36550.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01164 | 60563 | 62260 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001164s00033509.1 | PF01535.15 | PPR | 148 | 173 | 0.088 |
| Glyur001164s00033509.1 | PF13041.1 | PPR_2 | 176 | 222 | 3.40E-16 |
| Glyur001164s00033509.1 | PF13041.1 | PPR_2 | 281 | 329 | 1.10E-08 |
| Glyur001164s00033509.1 | PF13041.1 | PPR_2 | 351 | 400 | 1.10E-16 |
| Glyur001164s00033509.1 | PF13041.1 | PPR_2 | 421 | 470 | 2.10E-13 |
| Glyur001164s00033509.1 | PF01535.15 | PPR | 495 | 524 | 0.22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.272 |
| SRR1783600 | control | 2.219 |
| SRR1783602 | moderate drought stress | 3.040 |
| SRR1811619 | moderate drought stress | 3.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.001 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.124 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.373 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.173 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.159 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.820 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.147 |
| SRR2868004 | Drought Stress (root) | 7.989 |
| SRR2967015 | Control (root) | 6.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.594 |
| SRR9715740 | Leaf | 1.459 |
| SRR9715741 | Leaf | 1.753 |
| SRR9715739 | Root | 0.524 |
| SRR9715742 | Root | 2.304 |
| SRR9715743 | Root | 2.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.901 |
| SRR8749028 | MeJA induced 9h | 4.277 |
| SRR8749029 | MeJA induced 9h | 3.288 |
| SRR8749030 | Uninduced | 3.036 |
| SRR8749031 | Uninduced | 5.806 |
| SRR8749032 | Uninduced | 2.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.008 |
| SRR8400027 | Control - Root | 5.684 |