Gene detail information of Glyur001164s00033506 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28490.1 | 1.00E-48 | Protein of unknown function (DUF640) |
| NR | XP_007144019.1 | 4.19E-83 | hypothetical protein PHAVU_007G122300g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NNI3|LSH1_ARATH | 2.00E-67 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 |
| trEMBL | tr|V7BGL2|V7BGL2_PHAVU | 2.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:ESW16013.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01164 | 35479 | 36018 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001164s00033506.1 | PF04852.7 | DUF640 | 34 | 98 | 4.80E-22 |
| Glyur001164s00033506.1 | PF04852.7 | DUF640 | 99 | 139 | 2.80E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 91.906 |
| SRR1783600 | control | 91.732 |
| SRR1783602 | moderate drought stress | 106.396 |
| SRR1811619 | moderate drought stress | 104.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 127.462 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 125.150 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.841 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 124.648 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 119.114 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.370 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.186 |
| SRR2868004 | Drought Stress (root) | 5.214 |
| SRR2967015 | Control (root) | 7.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.129 |
| SRR9715740 | Leaf | 0.186 |
| SRR9715741 | Leaf | 0.570 |
| SRR9715739 | Root | 15.057 |
| SRR9715742 | Root | 61.575 |
| SRR9715743 | Root | 42.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.555 |
| SRR8400027 | Control - Root | 64.023 |