Gene detail information of Glyur001164s00033505 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28490.1 | 2.00E-25 | Protein of unknown function (DUF640) |
| NR | XP_002267312.1 | 6.80E-50 | PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera] |
| Swissprot | tr|Q9FGH2|LSH5_ARATH | 3.00E-43 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 |
| trEMBL | tr|F6H618|F6H618_VITVI | 3.00E-50 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47657.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01164 | 24580 | 25038 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001164s00033505.1 | PF04852.7 | DUF640 | 34 | 120 | 4.70E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 210.049 |
| SRR1783600 | control | 208.389 |
| SRR1783602 | moderate drought stress | 208.514 |
| SRR1811619 | moderate drought stress | 177.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 265.262 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 260.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.775 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 70.776 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 239.944 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 254.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.613 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.756 |
| SRR2868004 | Drought Stress (root) | 23.437 |
| SRR2967015 | Control (root) | 34.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.729 |
| SRR9715740 | Leaf | 0.179 |
| SRR9715741 | Leaf | 0.572 |
| SRR9715739 | Root | 21.674 |
| SRR9715742 | Root | 82.749 |
| SRR9715743 | Root | 75.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.435 |
| SRR8400027 | Control - Root | 96.154 |