Gene detail

Gene detail information of Glyur001164s00033504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08630.4	2.00E-157	threonine aldolase 1
NR	XP_003590973.1	0	L-allo-threonine aldolase [Medicago truncatula]
COG	YP_005443407.1	2.00E-114	putative threonine aldolase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|Q8RXU4\|THA1_ARATH	0	Probable low-specificity L-threonine aldolase 1
trEMBL	tr\|G7I6S7\|G7I6S7_MEDTR	0	L-allo-threonine aldolase-like protein {ECO:0000313\|EMBL:AES61224.1}

Sequence

Transcript Sequence

>Glyur001164s00033504.1
AAATTGTCCTAAACTCACGATTCTTTCTTCAGTAGCGTTTGTGTGTATATCCTGTAATCTCAGCATGCGGTTCCGCTCTGTGTAAAGAGTGGGGAACTTGAAGGTTGAATTGCGCCACAGATACACCTACCTCAATCTCCTTGGATCTTCTGTTNCAGAGAAAATGGTAACTAGAATTGTGGATCTTCGGTCAGACACAGTGACAAAGCCAACCGAAGCAATGCGAGCTGCTATGGCAAGTGCTGAAGTTGATGATGATGTTCTGGGCAATGACCCAACTGCTTTTCGCTTGGAGACAGAGATGGCAAAGACAATGGGAAAGGAAGCAGCTCTTTTTGTTCCATCAGGGACTATGGGGAACCTTATATGTGTGCTTGCCCATTGTGATACCAGGGGAAGTGAGGTCATTCTTGGAGACAATTGCCATATCCTTATTTATGAGAATGGAGGCATTGCAACCATTGGAGGGGTGCATCCAAGAACAGTGAAGAACAACNATGATGGAACCATAGACATCGATTTGATTGAGGCCGCTATCAGAGATCCAAGGGGGGAGCTCCTGTTTCCAACNACCAAGCTTATTTGCTTGGAAAATACTCATGCAAACTCGGGTGGTAGATGCCTTTCAGTTGAATATACAGATAGAGTTGGAGAGGTCGCTAAAAAGCACGGGCTGAAGCTTCACATTGATGGAGCCCGTATCTTTAATGCCTCAGTAGCACTTGGTGTTCCTGTGGATAGGCTTGTCCAAGCAGCTGATTCAGTTTCAACTTATGATTCCTTGGAAAATATGAATCAGGTTTGCCTATCTAAAGGCATAGGTGCTCCAGTTGGATCAATTATTGTTGGTTCCAAGAACTTTATCACTAAGGCTAGAATACTCCGGAAAACCTTAGGTGGAGGAATGAGACAGATTGGCATCCTTTGTGCAGCTGCACTTGTTGCCTTGAAGGAAAATGTTGGAAAGCTGGAAAGTGATCACAAGAAAGCTAGACTTTTGGCTGATGGACTGAATGAAATTAAAGGACTCAGAGTTGATCCATGTTCTGTGGAGACCAATATAATATATATTAAAATTGAAGCGGGTTCATGGACTACAGCAGAAAAGATTCGCAAGTACTTGGAAGAGCGTGGTATCCTTCTGATGCAAGAGAGCTCATCAAGATTGAGAATTGTCCTCCACCACCAAATATCTGCAAGTGATGTGCAGTATGCCTTGTCATGCTTTCAGCAAGCTGTACAGAATGAAAATGGCAACTAGTGGAAGAATATCACTTTGCTGGAGTATTATTAGTATATTAAAAGGGGAATTCCGAATTCCATTTGTCTTTGTTTATTTTATTTTCTTTGATGTACCCTAAAGAACGTACAAGGATTAAGATATTTCATGCCCCCTATAATGAATTATTTTGACTTTATCAATCGTTCCTCTGCTAATTAAGCACAATTAATTGCCTGGTGGGTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01164	10803	16543	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01620	ltaE	EC:4.1.2.48	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process
GO:0006520 cellular amino acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016829 lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001164s00033504.1	PF01212.16	Beta_elim_lyase	7	304	4.00E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.968
SRR1783600	control	25.056
SRR1783602	moderate drought stress	18.394
SRR1811619	moderate drought stress	18.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.108
DRR006520	Root Summer glycyrrhizin high producing strain	29.457
DRR006521	Root Winter glycyrrhizin high producing strain	8.744
DRR006522	Root Winter glycyrrhizin high producing strain	8.445
DRR006523	Root Summer glycyrrhizin low producing strain	17.472
DRR006524	Root Summer glycyrrhizin low producing strain	17.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.215
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.164

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.243
SRR2868004	Drought Stress (root)	55.875
SRR2967015	Control (root)	37.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.573
SRR9715740	Leaf	35.389
SRR9715741	Leaf	18.500
SRR9715739	Root	5.527
SRR9715742	Root	9.346
SRR9715743	Root	9.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.237
SRR8749028	MeJA induced 9h	12.892
SRR8749029	MeJA induced 9h	6.854
SRR8749030	Uninduced	12.203
SRR8749031	Uninduced	14.425
SRR8749032	Uninduced	10.324

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.828
SRR8400027	Control - Root	40.689