Gene detail information of Glyur001163s00025226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15690.1 | 3.00E-115 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003517821.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Glycine max] |
| Swissprot | tr|Q9ZQE5|PP153_ARATH | 4.00E-138 | Pentatricopeptide repeat-containing protein At2g15690 |
| trEMBL | tr|K7K128|K7K128_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G00640.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01163 | 81984 | 83357 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001163s00025226.1 | PF01535.15 | PPR | 147 | 174 | 0.00014 |
| Glyur001163s00025226.1 | PF01535.15 | PPR | 176 | 204 | 2.60E-05 |
| Glyur001163s00025226.1 | PF13812.1 | PPR_3 | 211 | 243 | 0.13 |
| Glyur001163s00025226.1 | PF01535.15 | PPR | 248 | 271 | 0.16 |
| Glyur001163s00025226.1 | PF14432.1 | DYW_deaminase | 356 | 447 | 7.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.224 |
| SRR1783600 | control | 5.304 |
| SRR1783602 | moderate drought stress | 4.655 |
| SRR1811619 | moderate drought stress | 4.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.828 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.659 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.663 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.127 |
| SRR2868004 | Drought Stress (root) | 3.708 |
| SRR2967015 | Control (root) | 4.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.719 |
| SRR9715740 | Leaf | 9.707 |
| SRR9715741 | Leaf | 6.405 |
| SRR9715739 | Root | 2.256 |
| SRR9715742 | Root | 1.915 |
| SRR9715743 | Root | 2.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.322 |
| SRR8749028 | MeJA induced 9h | 4.871 |
| SRR8749029 | MeJA induced 9h | 4.863 |
| SRR8749030 | Uninduced | 1.464 |
| SRR8749031 | Uninduced | 1.094 |
| SRR8749032 | Uninduced | 1.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.755 |
| SRR8400027 | Control - Root | 3.934 |