Gene detail information of Glyur001163s00025224.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29540.2 | 2.00E-122 | bacterial transferase hexapeptide repeat-containing protein |
| NR | KEH29431.1 | 0 | UDP-N-acetylglucosamine acyltransferase [Medicago truncatula] |
| COG | YP_002247942.1 | 2.00E-56 | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] |
| Swissprot | tr|Q9SU91|LPXA_ARATH | 4.00E-163 | Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072UJ42|A0A072UJ42_MEDTR | 0 | UDP-N-acetylglucosamine acyltransferase {ECO:0000313|EMBL:KEH29431.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01163 | 70215 | 74382 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00677 | lpxA | EC:2.3.1.129 | Lipopolysaccharide biosynthesis | map00540 |
| Cationic antimicrobial peptide (CAMP) resistance | map01503 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001163s00025224.1 | PF00132.19 | Hexapep | 90 | 123 | 7.90E-07 |
| Glyur001163s00025224.1 | PF00132.19 | Hexapep | 185 | 219 | 1.10E-09 |
| Glyur001163s00025224.1 | PF13720.1 | Acetyltransf_11 | 256 | 348 | 1.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.263 |
| SRR1783600 | control | 6.244 |
| SRR1783602 | moderate drought stress | 8.584 |
| SRR1811619 | moderate drought stress | 8.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.862 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.890 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.816 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.234 |
| SRR2868004 | Drought Stress (root) | 22.052 |
| SRR2967015 | Control (root) | 18.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.734 |
| SRR9715740 | Leaf | 8.528 |
| SRR9715741 | Leaf | 8.778 |
| SRR9715739 | Root | 2.963 |
| SRR9715742 | Root | 3.160 |
| SRR9715743 | Root | 3.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.764 |
| SRR8749028 | MeJA induced 9h | 14.012 |
| SRR8749029 | MeJA induced 9h | 10.388 |
| SRR8749030 | Uninduced | 5.912 |
| SRR8749031 | Uninduced | 2.247 |
| SRR8749032 | Uninduced | 3.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.757 |
| SRR8400027 | Control - Root | 11.981 |