Gene detail

Gene detail information of Glyur001163s00025219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29590.1	1.00E-117	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	AFK40746.1	0	unknown [Lotus japonicus]
COG	YP_002463155.1	2.00E-61	type 11 methyltransferase [Chloroflexus aggregans DSM 9485]
trEMBL	tr\|I3SKF4\|I3SKF4_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40746.1}

Sequence

Transcript Sequence

>Glyur001163s00025219.1
TAATGAACTGGGCCATCTTGGGTGAAGTACTCAAATTTTCTAGTAGTTTCACACAAGCTTGTCAAGATGGGCCTAGAAGTCACAAATAGTGCAGTGAGTTGTGCTACTGCTAGAGTGCCAGGCCCTATTGTGCAAATTAACTCTTAACGGGTGAGAGGGAAGATAGATAAGCAGCCACGTAACATGTATGTACATCACTTGAATGAATGAATGAATGAATGAATGAATGATGTGTGAGGATAATCCAACGGTGATGAGAGTGTTCCTAGACGATCCAGTAGTAGTTCATTTGGGGCAGAGCACAAGCAAAGTAACAACATGGTTTATTGTTGAGTGAGTAGTACCATGATGGCCAATTTTGTTGGACTGAGGTTACCACCTGTTGTGGGTTGTGGCACACGTTGTTATGTTGTTGCTGGTTGCTCTTCTTCCACAACCACTGCAGCTACTCTGTCTCTAATAAAGAAGTGGAACAGAAGGAGAGTAGTAGTAGTTAAGGCTCCTCGCCGCATGCTATTGGGCTTTGGGGCTTCTTCACTCTTGTTCTTGTCTCAGTTTATGAGTATGTCTGGCTCTGTGCCTGCCAAGTCCTTCATTGCCTCTGCCAGAATAAAGGCTGGTCCCTCAGTAGATGAGATACTGAAGAATGTGGAATGGCCAGAGCAGTTCCCCTTTAAGGAGGAGGATTTCCAGNGCTATGATGAGTCCCCAGATTCCATGTTCTATGAAGCACCTCGATTCGTGACACACATTGATGACCCTGCAATTGCTGCTCTGACCAAGTATTACTCCAAGGTTTTCCCACCTAGCAACACTCCTGGAGTAAGCATTTTGGACATGTGTAGCAGTTGGGTCAGCCATTTTCCACCAGGTTACAAGCAAGAACGAGTGGTAGGATTAGGCATGAATGAAGAAGAACTCAAGAGGAACCCGGTCCTCACAGAGTATGCTGTACAAGATTTAAATGTGAACCCAACACTCCCATTTGAGGATAACTCTTTCGACATCATCACTAATGTGGTCAGTGTTGATTACCTAACAAAGCCTCTTGATGTTTTCAAGGAGATGCGCAGGATACTCAAGCCAGGTGGACTGGCCATAATGAGCTTTTCAAACCGATGCTTTTGGACAAAAGCCATTTCTATATGGACATCAACTGGGGATGCTGATCATGTTATGATTGTTGGCTCATATTTCCATTACGCTGGAGGATTTGAACCTCCTCAGGCTGTTGATATATCTCCTAATCCTGGACGCTCTGATCCCATGTACGTTGTGTCCTCTAGGAAGCTCTCCACCGCTTGAGAGAAACTGAGAATTTGTAGCAAAACGCATTTACTTATCAGCACTTACTCTGATGGGAGATTAATTCTGTTCATTTTTTTATAGCAAATGTTTCTTGTGCACAAGGCGCCTTCATGTTCATGGCAATGTACAAAAAATTCTCCAAATAAATTAGTATGTTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01163	41275	44767	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001163s00025219.1	PF08241.7	Methyltransf_11	178	252	6.40E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.086
SRR1783600	control	9.172
SRR1783602	moderate drought stress	13.501
SRR1811619	moderate drought stress	13.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.062
DRR006520	Root Summer glycyrrhizin high producing strain	6.034
DRR006521	Root Winter glycyrrhizin high producing strain	19.733
DRR006522	Root Winter glycyrrhizin high producing strain	18.682
DRR006523	Root Summer glycyrrhizin low producing strain	7.514
DRR006524	Root Summer glycyrrhizin low producing strain	7.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.430
DRR006526	Leaf Summer glycyrrhizin high producing strain	107.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.617
SRR2868004	Drought Stress (root)	7.294
SRR2967015	Control (root)	7.752

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.045
SRR9715740	Leaf	96.699
SRR9715741	Leaf	68.088
SRR9715739	Root	4.651
SRR9715742	Root	4.794
SRR9715743	Root	4.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.726
SRR8749028	MeJA induced 9h	6.101
SRR8749029	MeJA induced 9h	4.449
SRR8749030	Uninduced	2.581
SRR8749031	Uninduced	1.754
SRR8749032	Uninduced	3.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.570
SRR8400027	Control - Root	13.081