Gene detail

Gene detail information of Glyur001163s00025212

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29670.1	1.00E-67	atypical CYS HIS rich thioredoxin 2
NR	XP_003517423.1	6.31E-123	PREDICTED: thioredoxin-like 2, chloroplastic-like [Glycine max]
COG	YP_002426386.1	2.00E-10	thioredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
Swissprot	tr\|Q5TKD8\|TRL2_ORYSJ	2.00E-86	Thioredoxin-like 2, chloroplastic (Precursor)
trEMBL	tr\|I1J4B6\|I1J4B6_SOYBN	2.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G00570.1}

Sequence

Transcript Sequence

>Glyur001163s00025212.1
NGAAAAATGGAAAATATCAATACAAGGGTGTGTTTTGACCAAAAATAAATAAAAACGCAAGGGTGTGTGGGACTGAGAAAGTGTGAACCATCTATTTATCTGCTTCTTTTTCTCATTTCTCTTCTCGAAGCTTAACTCAACCAACCGATTATCCATTCGAATTATCCATCTCATTCTCACACAAACACTCGTTTTCTCGCGCCATCATCTCATATCTCATGTCTCTAATTCAACCTTGTTTTTGTTATTTGAAGCGCTAGCAGTAGCAGTAACACTCTTTCCTTCCTTGTCTTGTCTTTGTGCAAATGGCACATGTTGATATTATTCGACTACGATTTCAGTCCCATCGATTCCCATCTTCCTCTTTCTNCACCACTCTCCCTCCGCCACCCTCCGCCGCCGAATTCTCAGGCAACACCGCCAAGAGGGTGTTCTCTCCGCCCGCGTATTCCTCTGCAGCGCCACCCGCCCTTGCTCTCTCACCCAGAAAGCACTCGCTTTCTTTCAAGGTATGTGCAACTGTTGCTGAAACTGGTCAGCCAAAATGGTGGGAGAAGAATGCACCAAATATGGTTGACATCCACTCCACGCAAGAATTTCTGAGTTCTTTGAGTCAAGCTGGGGATAGACTAGTTATTGTTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATACCCCAAGCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCTTGAAAGTAAATTTTGATGAGAATAAGCCAATGTGCAAAAGTCTGAATGTCAAAGTACTTCCTTACTTCCACTTTTATAGAGGGGCTGAGGGACAGCTGGAATCATTTTCATGTTCACTTGCCAAGTTTCAAAAGATAAAGGATGCCATCGAGACACATAACACGGCTCGATGCAGCATTGGTCCTCCTAAGGGCGTTGGTGATTTGCTTGTTGAACCTTCCTCTGTACTTCCCAAGGATAGACCAGCAGATTCTGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01163	28070	31066	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001163s00025212.1	PF00085.15	Thioredoxin	92	193	1.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.435
SRR1783600	control	18.050
SRR1783602	moderate drought stress	20.360
SRR1811619	moderate drought stress	19.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.406
DRR006520	Root Summer glycyrrhizin high producing strain	13.965
DRR006521	Root Winter glycyrrhizin high producing strain	5.135
DRR006522	Root Winter glycyrrhizin high producing strain	5.027
DRR006523	Root Summer glycyrrhizin low producing strain	8.967
DRR006524	Root Summer glycyrrhizin low producing strain	9.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.186

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.754
SRR2868004	Drought Stress (root)	15.789
SRR2967015	Control (root)	15.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.140
SRR9715740	Leaf	61.807
SRR9715741	Leaf	36.443
SRR9715739	Root	4.517
SRR9715742	Root	7.724
SRR9715743	Root	7.217

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.246
SRR8749028	MeJA induced 9h	9.844
SRR8749029	MeJA induced 9h	8.888
SRR8749030	Uninduced	6.137
SRR8749031	Uninduced	4.490
SRR8749032	Uninduced	5.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.994
SRR8400027	Control - Root	16.766