Gene detail

Gene detail information of Glyur001163s00025211.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29680.1	0	Alkaline-phosphatase-like family protein
NR	XP_003620941.1	0	Ectonucleotide pyrophosphatase/phosphodiesterase family member [Medicago truncatula]
COG	YP_003289692.1	9.00E-90	phosphodiesterase I [Rhodothermus marinus DSM 4252]
trEMBL	tr\|G7KJV4\|G7KJV4_MEDTR	0	Ectonucleotide pyrophosphatase/phosphodiesterase {ECO:0000313\|EMBL:AES77159.1}

Sequence

Transcript Sequence

>Glyur001163s00025211.1
CGAAATCTGAACTGATGATGTAAGAGGCAGATTAGCAGAATTAGCAGAAGTGAAATTGTAAGGGATGGGTAGTAGTAGTAAAGAAGAAGGAGCAGCAGAAGCAGCAGCAGCAACATCAAAACCTCTCCTCCCTGTCACGGCGGAGCCTCCTCCTTCTTCTTCTTCTCATAAACCCACTCTTCTCCTCAACTTCATCACGTGCATGTCACTCGCCGCAGCAGTCTCCTTCGCCTTTCTCTTCCTCTCCTCTCCCTCATCATCCACCTCACCAACACCCTCACCCACCGCCCGTCCCCTCACGAAGCTCCACCGCCCCGCCGTTCTCCTCATTTCCTCAGACGGCTTCCGTTTCGGCTACCAATTCAAAACCCCCACCCCCAACATCCACCGTTTAATCCAAAACGGCACGGAGGCGGAGACCGGCCTCATCCCCGTGTTCCCAACCCTCACATTCCCCAACCACTACTCCATCGTCACCGGCCTCTACCCTCCCCACCACGGCATCATCAACAACTTCTTCTTCGACCCCATCACCGGCGACAAATTCACCATGTCCAGCCACGAACCCAGGTGGTGGCTCGGCCACCCTTTGTGGGAAACCGTCGTCGACAACGGCCTAACCGCTGCCACATACTTCTGGCCGGGCTCCGAGGTGATNAAGGGTTCCTGGACTTGCCCCTTACGCTATTGTCAACACTATAACGGTTCTGTTCCCTTTGAGGATAGAGTGGATACTGTTTTGGAATATTTTGATCTTCCACTTGATGAAATCCCTTCGTTTATGACCCTTTATTTTGAGGACCCTGATCATCAGGGTCACATGGTTGGACCCGATGATGATGAGATCACTCAGGCTGTTGCTGGAATTGATGGCATTATAGGGAGGTTGATTAGTGGGTTGGAACAAAGAGGGGTCTTTGAGGATGTTACTATTATTATGGTGGGTGACCATGGGATGGTTGGTACCTGCGATAAAAAGCTTATCTTTTTGGATGATTTGGAGATTCCAGCAGATTGGGTACATTCTTACACTCCCTTGCTTGCAATTCGACCACCTAGTACTCATGCACCGGGTGATGTTGTGGCCACAATGAATCTGAGGTTGAGCTCCGGGGATGTTGAGAATGGGAACAAGCTTAGGGTGTATCTCAAGGAAGATCTGCCTCAAAGGCTTCACTATGCAGAGAGTGATCGGATTCCCCCCATAATTGGGTTGGTTCAGGAGGGTTATAAGGTGGAGCAGAGTAGAACGGGTAACAAAGAGTGTGGCGGTGCACATGGTTATGACAATGCACTTTTCTCCATGAGGACCATCTTCATTGGACACGGCCCTCAATTTGCCAGAGGGAGGAAGATACCCTCCTTTGAGAATGTTCAGATTTATAATCTGGTCACTTCTATCCTCAACATAAAGGGTGAGCCTAATAATGGCTCTGCCTCATTCCCCGAGTCTGTTCTTCTGCCCCATGCTCAACACTAAATATTTGGTCCTATTGTATTGTGTTCTCTATTCTCTAAGAGAGATTATCAGAAATATGAACATGATGATGAGATGTTGCAGAAAGAATAGGTATCATTTTTCTAGTNATTAAACTACTTGCACTTGAAATTGGTTTAACCTTTAGTATCTGTTGATGGATAAAGATTAGGTATAATAATATTCCTGTATTCTTCTAGGACNGAACTACTTCCACTTTAAATTACATTGCTACTATTTTCCGTATGTGGTTTATAATTCAATTTATGTGTCGGAATAAGGTACATGTTGGGCAGACCTTGGATAGCTGCAGGCCTCATATAAATAGCCTTATTTCACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01163	24307	26486	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01513	ENPP1_3, CD203	EC:3.1.4.1 3.6.1.9	Starch and sucrose metabolism	map00500
			Purine metabolism	map00230
			Pyrimidine metabolism	map00240
			Nicotinate and nicotinamide metabolism	map00760
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001163s00025211.1	PF01663.17	Phosphodiest	86	408	1.60E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.599
SRR1783600	control	32.205
SRR1783602	moderate drought stress	32.667
SRR1811619	moderate drought stress	33.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.640
DRR006520	Root Summer glycyrrhizin high producing strain	19.614
DRR006521	Root Winter glycyrrhizin high producing strain	9.827
DRR006522	Root Winter glycyrrhizin high producing strain	9.483
DRR006523	Root Summer glycyrrhizin low producing strain	33.463
DRR006524	Root Summer glycyrrhizin low producing strain	33.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.119
SRR2868004	Drought Stress (root)	17.388
SRR2967015	Control (root)	21.415

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.142
SRR9715740	Leaf	24.113
SRR9715741	Leaf	14.841
SRR9715739	Root	37.650
SRR9715742	Root	25.243
SRR9715743	Root	27.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.316
SRR8749028	MeJA induced 9h	14.769
SRR8749029	MeJA induced 9h	12.338
SRR8749030	Uninduced	9.023
SRR8749031	Uninduced	5.269
SRR8749032	Uninduced	8.509

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.843
SRR8400027	Control - Root	24.663