Gene detail information of Glyur001163s00025207 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24380.2 | 2.00E-69 | |
| NR | XP_003519190.1 | 2.44E-99 | PREDICTED: UPF0483 protein AGAP003155-like isoformX1 [Glycine max] |
| Swissprot | tr|Q94AC1|STR6_ARATH | 2.00E-17 | Rhodanese-like domain-containing protein 6 |
| trEMBL | tr|I1JGX4|I1JGX4_SOYBN | 9.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G37450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01163 | 8513 | 9883 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001163s00025207.1 | PF03959.8 | FSH1 | 10 | 167 | 4.50E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.999 |
| SRR1783600 | control | 40.254 |
| SRR1783602 | moderate drought stress | 25.602 |
| SRR1811619 | moderate drought stress | 25.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.602 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.670 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 63.668 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.766 |
| SRR2868004 | Drought Stress (root) | 54.500 |
| SRR2967015 | Control (root) | 26.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.473 |
| SRR9715740 | Leaf | 20.313 |
| SRR9715741 | Leaf | 59.152 |
| SRR9715739 | Root | 16.225 |
| SRR9715742 | Root | 38.890 |
| SRR9715743 | Root | 33.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.838 |
| SRR8749028 | MeJA induced 9h | 44.570 |
| SRR8749029 | MeJA induced 9h | 66.588 |
| SRR8749030 | Uninduced | 192.820 |
| SRR8749031 | Uninduced | 122.308 |
| SRR8749032 | Uninduced | 125.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.748 |
| SRR8400027 | Control - Root | 62.341 |