Gene detail

Gene detail information of Glyur001160s00034792.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14390.1	4.00E-167	Leucine-rich repeat protein kinase family protein
NR	XP_007153828.1	0	hypothetical protein PHAVU_003G068400g [Phaseolus vulgaris]
COG	YP_004775215.1	5.00E-21	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9M9S4\|Y1143_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (Precursor)
trEMBL	tr\|V7C6N0\|V7C6N0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25822.1}

Sequence

Transcript Sequence

>Glyur001160s00034792.1
ATACCAATGAGTCAGTGAGTGACAAAATAACTTTCCTATTTANTAGTTTTTCTCTTCAAATTATTAGATCACAACTGGAAAAGAAANAAAAGGAAAAGATTCTGTTTTATATAGCCATCTTCTTAGCAATTTCACTGTTGTCATGTCAAAATCATTTGCTTCAGCTCCTAACTNTGCAATATAGTGTGCTGTGACCAACCAATCTCTATCTTACTACATATATTTTGGCCTAAGAATATGATGAAGAAATTGTTGGGTTCTTTGTGTTACTTGTTTCCTGCAATCATTCTTATGCTGCTTACTAGTCCTACATCAATTGCACAGCTAACACCAAGTGAGAATAGAATCCTTTTCCAAGTTCAGAAGCTTCTTGAGTATCCTCAAGCTCTTCATGGATGGAATAGGTGGACCAACTTCTGCTTCCTCCCTCCTTCCCCTTCACTCAAGATAGTTTGTTCCAATGGTCATGTCACAGAATTAACCATCATAGGTAACAAGACCTCCCCATCTTCTTCATACAGAACCAAAGGTCCTCAAGGCCTCTCAGGAAGCTTTTCAATTGATTCCTTATTTACTGTCACGACAAAGCTCTCAAATTTGAAGGTGTTGTCATTGGTTTCCTTGGGTTTGTGGGGTCCACTACCAGCAAAGGTAAACAGGTTCTGGTCTTTGGAAGTTCTTAACATTAGCTCAAATTTCATTTCTGGGGAAATCCCATCATCAATATCCTCTCTGAAGAATCTTAAAAGTCTTGTTTTGGCTGATAATCTCTTCAATGGAAGTGTCCCAGATCTCAAAAGTTTAACTTCTCTTGAAGAACTCAACTTGGGTAGTAACAATCTGGGACCTGAATTCCCTTCAGTGGGGAAGAATCTTGTGANTATTATCCTGAGAAAGAATTCATTGAGATCACAGTTTCCTCCCCAGCTAGTGCACTTTGATAAACTTGAGATATTTGACATCTCTTCCAATAAGTTCTTTGGAAACATTCCATCCTCTCTCTTCTCATTGCCTTCCCTCAAGTACCTAAACTTGTTCTCAAACAAACTGAGTGGTAACCTCTCAGTGAACACAGCCTGTGGTTCTGCACTTACATATNTGGATATCTCACACAACCTTCTAGTAGGGAAACTACCATCCTGCATTGGTTCAATGTCTTCAAAGGCCACAACAGCACTATATTCTTGGAATTGTTTCTCAACCAAGAGGTTGAATGATCAGCAACATCCATCTTCCTATTGCAAGAAAGACGCGGCCTTAGCCGTTAAGCCTCCTACTAGGAAGCTGGNGAAGGAAAAATCAAGTATGAAACTAGGCCTTGTACTTGGTATAATAGGAGGTGTTGTGGGAGTTGCAAGTCTTGTAGCTCTACTCATTGTGTTCATCTTGAGGAAGTCCAAAGCAGGAAGATCAGATCATAACATGGACAGATCTGTTGCTCAAAAGTTTTCAGCCAGTGCATCTCCCAAACCAAATATCAATGCAAGACGTGTTCCTCAGACAATGAGGCTAGCATCAGTTGGACTACCACCATACCGGATTTTCACATCAGATGAAATTGAAGATGCAACAAACAACTTTGACCCATCAAATCTGTTAGGAGAAGGATCACAGGGACAGCTATATAAAGGCTGGATCAGAGATGGTTCAGTGGTCCTGGTCAATTGTGTAAAAATAAAGCAAAAGGGTTTGCCCCACAGCATTATGCAGGACTTAGAGGTATTGCCCAATTTGAGACATAGGCATATGGTGAGTGTTCTAGGACACTGTGTCATTACTCATCATGACCCTCCCCAAATAACAAGTACAGTCTTCATTGTATTTGAATACATCTCAAATGTGACACTGAGGGATCAACTTACAGATTGGAAAAAGAGGGATATGCTGAAATGGCCACAAAGAATGGCAATCAGCATAGGCATTGCAAGAGGGGTCCACTTCTTACACACAGGAGTTGCTCCTGGCATATTTGGCAACAAATTGAAGATTGAGAATATTCTGTTGGATGATAGTCTCAATGCAANAGTCAGTGGATACAGCATTCCCTTGCCATCCAAGAGTGCACTTAATGAACAAAGTGCCACCAATCATATTGGAAGCACAAATAATGCAGAAAAGGAAGATATCTATCAGCTGGGTGTTATTCTACTTGAAGTTATTACTGGCAGACAAATTGCATCCTCCAGTGAAGTAGAGCAGCTGAAGGATGAGTTGGAGAGAGGTTCATCAGAAGCAGCATCAGTACTAAGAAGTGCAATTGATCCTTCCCTGAGGGGAAGTTATGCATATGAATCAATGAGGACTGCAGTTCAAATCACCACCAATTGTCTCTCTAAGGTTCCTAGTAAGCGCCCTTCAATAGAGGATGTTCTCTGGAATTTGCAGTACTCAATGCAAGTTCAAGAGTCGTGGACCAGCAGTGGGAACCTCAGCACAAAATTGTAATTTGTAAACACCCTTGTCAATATGAATGTTTGATTTCATTTCATAAGTTCATTGATCATAATGAACAAATGATAATGTAAATATGTGATTTCTTCTATAAGGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01160	53279	57103	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001160s00034792.1	PF00560.28	LRR_1	144	166	0.05
Glyur001160s00034792.1	PF13516.1	LRR_6	189	207	0.15
Glyur001160s00034792.1	PF00560.28	LRR_1	236	257	0.99
Glyur001160s00034792.1	PF00069.20	Pkinase	452	712	1.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.346
SRR1783600	control	33.464
SRR1783602	moderate drought stress	34.832
SRR1811619	moderate drought stress	34.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.893
DRR006520	Root Summer glycyrrhizin high producing strain	21.603
DRR006521	Root Winter glycyrrhizin high producing strain	11.637
DRR006522	Root Winter glycyrrhizin high producing strain	11.264
DRR006523	Root Summer glycyrrhizin low producing strain	13.305
DRR006524	Root Summer glycyrrhizin low producing strain	13.552
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.764
SRR2868004	Drought Stress (root)	59.850
SRR2967015	Control (root)	65.168

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.090
SRR9715740	Leaf	0.695
SRR9715741	Leaf	2.101
SRR9715739	Root	3.930
SRR9715742	Root	19.241
SRR9715743	Root	13.777

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.990
SRR8749028	MeJA induced 9h	7.482
SRR8749029	MeJA induced 9h	4.477
SRR8749030	Uninduced	3.837
SRR8749031	Uninduced	0.859
SRR8749032	Uninduced	0.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.703
SRR8400027	Control - Root	43.982