Gene detail information of Glyur001160s00034788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 4.00E-09 | F-box/RNI-like superfamily protein |
| NR | KEH19788.1 | 0 | FBD protein [Medicago truncatula] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 2.00E-16 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|A0A072TSF4|A0A072TSF4_MEDTR | 0 | FBD protein {ECO:0000313|EMBL:KEH19788.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01160 | 24131 | 26858 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001160s00034788.1 | PF00646.28 | F-box | 23 | 54 | 0.0002 |
| Glyur001160s00034788.1 | PF08387.5 | FBD | 398 | 439 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.048 |
| SRR1783600 | control | 0.050 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.074 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.291 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.412 |
| SRR2967015 | Control (root) | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.014 |
| SRR9715740 | Leaf | 10.379 |
| SRR9715741 | Leaf | 10.337 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.413 |
| SRR8749028 | MeJA induced 9h | 10.126 |
| SRR8749029 | MeJA induced 9h | 3.550 |
| SRR8749030 | Uninduced | 4.781 |
| SRR8749031 | Uninduced | 5.249 |
| SRR8749032 | Uninduced | 6.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.011 |
| SRR8400027 | Control - Root | 0.000 |