Gene detail

Gene detail information of Glyur001158s00022961

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11915.1	4.00E-99
NR	XP_004507668.1	0	PREDICTED: uncharacterized protein LOC101493670 [Cicer arietinum]
Swissprot	tr\|Q9LMN8\|WAK3_ARATH	2.00E-06	Wall-associated receptor kinase 3 (Precursor)
trEMBL	tr\|V7C9D8\|V7C9D8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25973.1}

Sequence

Transcript Sequence

>Glyur001158s00022961.1
ATGGGTTTGCAACTTGTTCTTACCCACAACCAAAAACCAATCNTTTTACTANTTATCATTCAACTCATATTTCGCTCATTCTCCACCCTCACAATCACAAGAGCTCAATCCAGCCTCTGCAGAACTTCCTGTGGCAACATTCCCATCCAATACCCTTTCGGCATTGACGATGGCTGTGGAAGCCCATATTACAGATACATTCTAGCTTGCTCTGACTCAGCAAAGCTTGAACTCAGAACCCCTTCTGGTAGATACCAAGTTCACAACGTTAGCTATGCCGATCCACACATTCTAGTCACTGACCCATTCATGTGGAGCTGTGAGGATGGTGAGAATTATCGTCCCACAAGGCCATTCAGTTTAGACACGAGCACCCGTTTCAAGCTCTCCCAACAGAATGAGTACCTCTTCTTCAATTGCAGCGAAGAAAACGTGATCGTTAAGCCAAAGCCCATTTTTTGTGAGCGTTTCCCTGAACACTGTGATTCATCGTGTGACAGTGCTAGCTATCTCTGCAGGCACTTGCCAGGGTGTTCCTTTGCCATGAGTGGTTCTTCTTGCTGCTCTTACTACCCAAAAGCCACTGAATCGTTGAGGTTGATGCTCAAGTATTGTACTAGTTATACTAGCGTTTATTGGAGAAACGTTGGTGCTCCTCAGCCTTATGATCAAGTCCCTGAGTATGGGATCAGAATCGATTTTGATATCCCNGTCACNACGCGATGTCTTCAGTGTCAGGATCCATCCAAAGGAGGTGGAACTTGTGGATTTGACACTGACACACAGAATTATGACATGGCACGGCACAATAGGAATGTCCATGTAATTGCAGGGACAGTTACTGCTATTTCGGCTTTTGGGGCATTTGGAATTGGAGCTGGTATTTGGTACTTGAAGAAAGTGAGAGCTAAAGCACCTGTGACATGTGGAGTTCAAACCAACGAGAACAGACTTTTCTGAAGACAGACCAAATAATGCGAACCACATAAATACACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01158	79915	81357	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001158s00022961.1	PF13947.1	GUB_WAK_bind	39	141	2.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.270
SRR1783600	control	1.244
SRR1783602	moderate drought stress	1.315
SRR1811619	moderate drought stress	1.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.825
DRR006520	Root Summer glycyrrhizin high producing strain	2.572
DRR006521	Root Winter glycyrrhizin high producing strain	0.736
DRR006522	Root Winter glycyrrhizin high producing strain	0.633
DRR006523	Root Summer glycyrrhizin low producing strain	4.867
DRR006524	Root Summer glycyrrhizin low producing strain	3.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.455
SRR2868004	Drought Stress (root)	1.420
SRR2967015	Control (root)	1.788

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.800
SRR9715740	Leaf	0.063
SRR9715741	Leaf	0.267
SRR9715739	Root	0.573
SRR9715742	Root	0.394
SRR9715743	Root	0.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.670
SRR8749028	MeJA induced 9h	1.447
SRR8749029	MeJA induced 9h	3.367
SRR8749030	Uninduced	3.986
SRR8749031	Uninduced	6.765
SRR8749032	Uninduced	7.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.378
SRR8400027	Control - Root	1.825