Gene detail

Gene detail information of Glyur001158s00022951

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein
NR	XP_004507664.1	PREDICTED: uncharacterized membrane protein YLR241W-like [Cicer arietinum]
Swissprot	tr\|Q5XEZ5\|CSC1_ARATH	Calcium permeable stress-gated cation channel 1
trEMBL	tr\|G7KK36\|G7KK36_MEDTR	ERD (Early-responsive to dehydration stress) family protein {ECO:0000313\|EMBL:AES92669.1}

Sequence

Transcript Sequence

>Glyur001158s00022951.1
ATTTTATATTTTATATCAAATCATTTTTTATTTTAACGAAATCACACATTTTTATAAGCTACAAGCTTCTAGTACACACTGGTACAAAGCATGAGCGGAGAATGAGACATTCGTGTTGCGCTGTTCACCAGTCACCAGTAACGTAACAAGGTAGTTGGTGGTGTGTACAAGAGGAAAAGCTCAAAAGTTGCGTGTCTTCCACGGAGGCTTCCCTGCAAAACGGTGGCGGAATCTTAATTGCTTCCTTCCGTTTTGAAGATATCCGAATACCCTCTGATTCAACCTNGGATCTTCCTGTCTCTGATTTTCTGTCATTGCTGGACTTTAAACACGCTTTGTGGGGTTTCACTTGGCCGAATTGTGAGCGACAAGCACAAAGAAGACTTGTATTTTTCTCTAGAGGAGAAAGAAGATGGCTACACTGTCAGATATTGGGGTTGCAGCTGCAATAAACATTTTGAGTGCATTTATCTTCCTTGTGGCATTTGCTATTTTGAGGCTTCAGCCTTTCAATGACCGGGTATACTTCCCAAAATGGTATCTTAAGGGTTTAAGAACAGATCCTGTACACGGAGGAGCGTTTGTGCGCAAGTTTGTGAATTTAGATTGGAGATCATATATTAGGTTTTTGAATTGGATGCCAGCTGCACTTAGAATGCCAGAACCTGAGCTTATTGACCATGCTGGACTGGACTCCGTTGTTTACTTGAGGATTTACTTGTTAGGGCTTAAAATCTTTGTTCCTATAGCATTCCTGGCATGGGTAGTTCTGGTTCCTGTCAACTGGACAAGTTCTGGGTTAGAAGTAGCTGGGCTAAAAAACATAACTTCCAGTGACATCGATAAACTCTCAATTTCAAATGTCCAACGTGGATCTGAAAGGTTTTGGACACACATAGTAATTGCTTATGCATTTACCTTTTGGACATGCTATGTTTTGCTGAGGGAGTATGAAAAAGTTGCCTCAATGAGATTGCAATTTCTTGCAGCAGAAAAACGTCGTCCTGATCAATTTACGGTGCTTGTTAGAAACATTCCACCAGATCCTGATGAATCTGTCAGTGAGCTTGTGGAGCACTTTTTCCTGGTCAATCATCCAGACAACTATCTTACTCACCAGGTTGTTTATAATGCAAACAAACTAGCTAAATTGGTCAAAAAGAAGAGTAAGATGCAAAATTGGCTTGTCTANTATCAAAATAAACTAGAAAGAACTTCAAAAAGACCTGAAACGAAGACTGGCTTCCTTGGTCTTCGTGGAAAAAAGGTTGATGCTATTGATTATTACACCGCTGAAATTGACAAGCTGTCAAAAGATATAGCTTTAGAGAGGGATAAGGTCACTAATGATCCCAAGTCTATCATGCCTGCTGCATTTGTTTCTTTTAAAACTCGATGGGGTGCTGCAGTTTGTGCACAAACTCAACAAACCAGAAATCCAACACTTTGGTTGACTGAGTGGGCTCCAGAGCCACGGGACGTCTATTGGCCAAACTTGGCAATTCCATATGTTTCCCTAACTGTTAGAAGGTTGATCATAGCTGTTGCATTCTTTTTTCTCACTTTCTTTTTTATGATCCCCATTGCATTCGTACAAACTCTTGCAAGTCTTGATGGGATCCAGAAAGCAGCACCTTGGTTGGAGCCACTTATTCGTGTCCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCTGGTATTGCATTGAAGCTTTTTCTTATCTTTCTGCCAACAATATTGATGATCATGTCAAAATTCGAAGGCTTTGGATCTATATCATCTCTGGAGAGAAGATCAGCTTCTAGATATTATCTTTTCAGTTTTGTGAATATATTTCTTGGGAACATACTTACTGGGACAGCATTTCAACAGCTGGACTCTTTCATTCACCAACCAGCCAATCAATATCCCATAACAATTGGCACTGCAATTCCTTTAAAAGCAAGTTTCTTCATTACTTATATAATGGTTGATGGATGGGCTGGTATAGCTGCTGAGGTTTTGATGTTGAAACCACTAATCATATATCACTTGAAGAATTTCTTCTTGGTAAAGACTGAAAAGGACAGGGAAGAGGCCATGGATCCTGGGAGTATTGGTTTCAACACTNGAGAACCTCGTATACAATTGTACTTTTTGCTGGGTCTAGTCTATGCTGCAGTGACACCTTCTGTTCTTCCTTTCATAATAATTTTCTTTGGGCTGGCCTATGTTGTGTTCCGTCATCAGATTATCAATGTTTACAATCAACNGTACGAGAGTGGAGCAGCATTCTGGCCTGATGTCCATTTACGTATTGTGATTGCACTGATAGTCTCACAGGTAGTTTTNTTGGGACTCCTGACCACCAAAAAGGCTGCTTCATCAACTCCTTTTCTCATTGTGCTCCCGGTACTGACCATATGGTTCCATAGATACTGCAAAGGCCGTTTTGAACCTGCATTTGTCAGATATCCCTTACAGGAAGCAATGATGAAAGACACATTAGAACGAGCCACAGAACCTAACCTGAACTTAAAAGGCTACCTTCAGTATGCTTATGTTCATCCAGTTTTCAAGGCTAGCCATGATGATGATGATGAGGAAGAGGTAATGAGTCAAANGTGGGAAACTGAGAGTGCTACTGTGCCCACAAAACGCCAATCACGAAGGAATACACCATTGCCTAGCAGAGTTAGTGGTGCATCATCTCCGTCTCTGCCTGACGGTATTAAAAATTATCCAGAGCCATAAATCATGGAACAAGGAATGATATCATCATTATTGACCTGATAAACTAGGATGTATGTGCATTGAGCTACATCAGTGGACGTGTTTGTAGCATAAGCTGANGAAGCTGGGTGGGTTAGGCTTCTTGTGTAAAAGCGTTTTGGCATTTTTGGTCAGCGGATGAAATGTCACTACCCCTACTTGCAGAGACCGTACGGCAGAGATTCTTTCATTATGTTTCAGATTTCTAATTGTTAATGGTGAATTTGTTTCCTTGGTAGATAAACGTGCTTTTCAAATCTGTATCGCCAGCACATAGAGGATTTGCATAACATTACCCCATGGGATCCTGTAAATTATCCAAAAGTTGTTCATGTTTCTAGGTCGTGTGTATAATTTTCTCTCTTTTTTCCTTTCGCTTTTCCTTGAGATTCAGCTCCGTTTATCTGTGAAAAAAAATATGTTGTACGTTTGTAGCACAAGGAGGTTTTCCATTCCACTAAATAAAGTAAATATTGTCCCACGTTAATTGNAAGGTAAATACTCACACAACTGAGTATCTGTTTCTCGTTTTCAGTTGCTTTCTTTATCTGCATCCCATAAAGGATACAAAGGATTTCATAGTAAATGGCTATGGTATGAAATCATACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01158	39685	46813	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001158s00022951.1	PF13967.1	RSN1_TM	7	179	5.40E-43
Glyur001158s00022951.1	PF14703.1	DUF4463	237	299	2.10E-16
Glyur001158s00022951.1	PF02714.10	DUF221	321	644	1.50E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.514
SRR1783600	control	26.443
SRR1783602	moderate drought stress	26.537
SRR1811619	moderate drought stress	26.293

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.926
DRR006520	Root Summer glycyrrhizin high producing strain	31.974
DRR006521	Root Winter glycyrrhizin high producing strain	30.595
DRR006522	Root Winter glycyrrhizin high producing strain	29.550
DRR006523	Root Summer glycyrrhizin low producing strain	40.322
DRR006524	Root Summer glycyrrhizin low producing strain	40.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	113.230
DRR006526	Leaf Summer glycyrrhizin high producing strain	113.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.857
SRR2868004	Drought Stress (root)	40.651
SRR2967015	Control (root)	33.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	157.793
SRR9715740	Leaf	152.986
SRR9715741	Leaf	142.958
SRR9715739	Root	14.005
SRR9715742	Root	56.078
SRR9715743	Root	45.840

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.488
SRR8749028	MeJA induced 9h	16.681
SRR8749029	MeJA induced 9h	17.206
SRR8749030	Uninduced	13.320
SRR8749031	Uninduced	7.692
SRR8749032	Uninduced	5.959

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.494
SRR8400027	Control - Root	85.106