Gene detail

Gene detail information of Glyur001158s00022948.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62360.1	4.00E-98	KNOX/ELK homeobox transcription factor
NR	XP_007153990.1	1.21E-169	hypothetical protein PHAVU_003G081800g [Phaseolus vulgaris]
Swissprot	tr\|P46608\|HSBH1_SOYBN	2.00E-152	Homeobox protein SBH1
trEMBL	tr\|V7C761\|V7C761_PHAVU	5.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:ESW25984.1}

Sequence

Transcript Sequence

>Glyur001158s00022948.1
TTCTTGATTCATTCCAAGCACCCAAAATCTGATGGCGCCCTAGATTAATCACATCATTTGGATTTGATAAAATCCCGTATGGTAGAAAGAAAAGGAGGAGAGAGAAGGAAGGGTGATTCCGTGCTGAAAAACCTATCTCCCCGTGTCCATGGCATAAGCATATATCCATCCATGGTCAGTATATTATTAGTAGACAGTAGTAGGTGACTTGTTGGCTATTCCTCGATTTGATCGATCCATCTTTTCCAGCCAACAAAGAATCCATCCGACTCTCTCTCTCTCTCTGATCTGTGCTGCCTGCCTGCCTGCCAGTATATGGCAGGAGTGTATCAGTGGTAGTGCAGCAAAAGTGGGAGAGAGTTTTCATTGGGAAGGTAAAGCCCCTTGTCTGTTTCAATCAACCATTGTATTTGTATCAACCACTCCACTCCTCTTCTCTACACAACTCGAGTGACTGAGTTTATCGCTCTCCTCTCTTCTGCATGCCCCGCGTGCGCTCTTCTGCTCCTTCCTTCCCCCCTTTTCCTTCTCACCAACCAATTAAGAAGTGTATCCGCTGTGTGCAGAGAGAGTTATTATTAATGCTAAATGGGGTTGTAATAAGAATAAGAACGATTAACACCTACTACTAGTACTATTTCCCCAAGGAAATTATTATTTATATACAGGCTTTTGTCAGTCGGGGGGAAAATAAACCAACCCTTTTTCGACTACTTCATGTAGTAGCTAGCTGACCACCACCATCACTACTATTTTGGATTTTTGCTGTAAAAGTCCTGAAACTCATCCCATAAAATCCGGGAGTGCCCTGTCCCGNAGAGTAAGACAACCAACCATCTTCACAGCAAAAAGAGTACCCTGAGAAAGAGACAGAGAGAATAATAGAAAGGTCGTCATTTATTCATATGTAGCTAGCGAGTTGAATTGAAGTAATTGTTGTGTGCTATATAGATAGATAGATAGATAGATAGATAGAAATAGAAAAAAAATATATAAAAAATAGGGGAAACGGTTAAGAGTGTGTGAATTGGTGAGGGAGGGAGTGATGAGCAGGTAAGTAATGGCAATGGAGGGGAGTTGTTCTAATTCTAGTGCTAATTGTAATGGCAGCATTTGTAGTTGGATGGGTTTTGGAGGGAACAGCGGTAGTGGGGTTTGTCCAACGATGATGATGCCTCTAGTGACTTCTAATCATGCCGGTCACTATCCAATTAATCCTAATCTCAATAATCCCAATCATCCTAATCCTAATCAACACACCAACAGTCTCTTCCCCATGCCTTTCACCACTATTAATAATAATAACAATAACAATGATCACTACCCAAACCCAAACCGAAACTGCAATAGCAGCGACAACAACATGCTGGAGAATAACCATAACCACAACATGACCAACAGCACTGGGTTAGGGTATTTCATGGAGATCAACCACAACAACAACGATGGAAGCTCTTCCTCTTCTTCTTCTTCTTCAGCTGTGAAGGCCAAGATCATGGGACATCCTCACTATCACCGCCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGGTGGCAAGGTTAGAAGAAGCGTGTGCATCGGCTGCAGGTGGTGGGACAGGGACAGGGTGCAGCATCGGTGAGGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCAACAAGTACCAACAAGAACTCTCCAAACCCTTCAATGAAGCCACGCTCTTTCTTCAAAGGATCGAGTCTCAGTTCAAATCTCTCACCCTTTCTTCCTCTGATTTTGGTTGTGAAGCAGGTAGGAATAATGGGTCAGCTGAAGATGTTGATGGAAACAACAACATGATAGACCCTGAGGCAGAGGACCAAGAGCTGAAGGTTCAACTTCTACGCAAGTACAGTGGATACCTTGGCAGTTTGAAGCAGGAATTCATGAAAAAGAGGAAAAANGGGAAGCTGCCTAAAGAAGCAAGGCAACAGTTGCTTGAGTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAGTCGCAGAAGCTGGCTCTTGCAGAGGCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAAAGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGACACTGTTCTCGCCAATCCCTTCCCCATGGATCTTTCCCACACAATGCTCTGAAATAAAATGTTTTGGTGCTTGTGGTCTGAAAGATTAATATGCATTATTATTATGTCAGAGTATAAAGCGCTCGTAAACACATGAGTATGACGCTTTAATTTGTAACGATATTTATTTATACATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01158	12290	17644	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001158s00022948.1	PF03790.8	KNOX1	140	180	3.10E-22
Glyur001158s00022948.1	PF03791.8	KNOX2	190	238	5.00E-23
Glyur001158s00022948.1	PF03789.8	ELK	273	294	3.60E-11
Glyur001158s00022948.1	PF05920.6	Homeobox_KN	313	352	8.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.862
SRR1783600	control	42.722
SRR1783602	moderate drought stress	60.141
SRR1811619	moderate drought stress	59.534

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	121.614
DRR006520	Root Summer glycyrrhizin high producing strain	120.860
DRR006521	Root Winter glycyrrhizin high producing strain	107.264
DRR006522	Root Winter glycyrrhizin high producing strain	103.384
DRR006523	Root Summer glycyrrhizin low producing strain	59.524
DRR006524	Root Summer glycyrrhizin low producing strain	58.313
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.118
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.559
SRR2868004	Drought Stress (root)	4.884
SRR2967015	Control (root)	12.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.026
SRR9715741	Leaf	0.000
SRR9715739	Root	22.789
SRR9715742	Root	24.299
SRR9715743	Root	21.642

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.289
SRR8400027	Control - Root	73.975