Gene detail information of Glyur001157s00034146 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03000.1 | 1.00E-54 | EF hand calcium-binding protein family |
| NR | XP_003628778.1 | 1.42E-101 | Calmodulin [Medicago truncatula] |
| COG | YP_001866396.1 | 3.00E-17 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9LQN4|CML17_ARATH | 4.00E-81 | Probable calcium-binding protein CML17 |
| trEMBL | tr|G7LH05|G7LH05_MEDTR | 5.00E-102 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AET03254.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01157 | 76286 | 77701 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001157s00034146.1 | PF07816.6 | DUF1645 | 75 | 106 | 9.00E-05 |
| Glyur001157s00034146.1 | PF13499.1 | EF-hand_7 | 127 | 186 | 1.00E-13 |
| Glyur001157s00034146.1 | PF13499.1 | EF-hand_7 | 202 | 263 | 7.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.832 |
| SRR1783600 | control | 4.812 |
| SRR1783602 | moderate drought stress | 5.297 |
| SRR1811619 | moderate drought stress | 5.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.920 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.587 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.559 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.254 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.920 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.172 |
| SRR2868004 | Drought Stress (root) | 8.048 |
| SRR2967015 | Control (root) | 4.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.953 |
| SRR9715740 | Leaf | 1.298 |
| SRR9715741 | Leaf | 13.515 |
| SRR9715739 | Root | 2.214 |
| SRR9715742 | Root | 8.032 |
| SRR9715743 | Root | 5.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.736 |
| SRR8749028 | MeJA induced 9h | 17.016 |
| SRR8749029 | MeJA induced 9h | 18.355 |
| SRR8749030 | Uninduced | 32.585 |
| SRR8749031 | Uninduced | 7.502 |
| SRR8749032 | Uninduced | 7.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.308 |
| SRR8400027 | Control - Root | 7.336 |