Gene detail information of Glyur001157s00034144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46870.1 | 8.00E-40 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | AFK43849.1 | 1.63E-68 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SUA7|I3SUA7_LOTJA | 6.00E-69 | Uncharacterized protein {ECO:0000313|EMBL:AFK43849.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01157 | 52241 | 55580 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.680 |
| SRR1783600 | control | 1.406 |
| SRR1783602 | moderate drought stress | 2.166 |
| SRR1811619 | moderate drought stress | 2.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.189 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.880 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.644 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.063 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.185 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.993 |
| SRR2868004 | Drought Stress (root) | 1.873 |
| SRR2967015 | Control (root) | 1.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.143 |
| SRR9715740 | Leaf | 2.437 |
| SRR9715741 | Leaf | 1.612 |
| SRR9715739 | Root | 0.213 |
| SRR9715742 | Root | 0.621 |
| SRR9715743 | Root | 0.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.347 |
| SRR8749028 | MeJA induced 9h | 6.303 |
| SRR8749029 | MeJA induced 9h | 4.334 |
| SRR8749030 | Uninduced | 1.798 |
| SRR8749031 | Uninduced | 1.927 |
| SRR8749032 | Uninduced | 1.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.517 |
| SRR8400027 | Control - Root | 2.510 |