Gene detail

Gene detail information of Glyur001156s00035641

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
NR	XP_006578451.1	PREDICTED: protein argonaute PNH1-like isoform X2 [Glycine max]
Swissprot	tr\|Q69VD5\|PNH1_ORYSJ	Protein argonaute PNH1
trEMBL	tr\|K7KK31\|K7KK31_SOYBN	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur001156s00035641.1
TTGTGTGTTCTCCACAGAATTACACTGCAACAGATGAAGGAGCTAGAGGAGCAGCAGCATCAAGTGAAATCTAGGAGGCGTCTACAGAAACCCACAGAACGTAGAAGAAAGGGAAATAATAACAACAATATTAACAAAAGAAGAAGCCAAAGCANATTGCAAGAAACAGGACCTCATAATTCACAACTGGTTTCCCTTTCCTCTGNTACTTGCAACAAGAGCCTCGTGTTCCCTCGCAGACCTGGCTATGGCCAACTTGGGACTAAGTGTCTGGTNAAAGCTAACCATTTCCTTGCAGATATTTCAGTTTCCGACTTAACCCATTACAATGTTAAGATAACACCCGAAGTCACTTCTAGTAAAACAAGAAAGGCTGTGATATCGGAGCTTGTGAGGCTTCACAGGAACACTGACTTGACCACCAGGCTCCCNGTGTTTGATGGAGGAAGGAATCTTTACACTGCTGGAGTTTCAATTACTTGTTACAGGGAACGGGAATTTAAGGTGGTGATCAAGTTTGCAACTCGTGTTAGNATGCAACAACTTCGTGATCTTCTTAGTGGGAAACAAGTGGACACCCCACAAGAAGCGCTTACCGTCTTTGACATTGTGTTAAGGGAGATTGCAGCTCAGAGGTATATGTCATCAATGGCATTTATTGAACCACTACCTGTAATTGACTTTGTTGCTCAAATTCTCGGAAAAGATGTGCACACAAAGGCATTGTCAGATGCAGATTGTGTCAAGATTAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAACNTTTAGAAGGAAATACAGAATATCAGGATTGACTTCACAACCAACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTGGTTGATTATTTTCATGAAGTGTATGGATATACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAAGAAAGTAAACTATTTGCCCATGGAGGCTTGTAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTTAATGAAAAGCAGATAACTTCCCTGCTTAAGTTCTCATGCCAGAGACCACGTGAACAAGAGACTGACATTTTACAGACAATTCAACAAAACAATTATGAAAATAATCCCTATGCAAAGGAGTTTGGCATCAACATAGACAACAAGCTTGCATCAGTGGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAGTATAATGACACTGGAAGAGAGAAAGAATACTTGCCACNAGTTGGTCAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTAATGTAAGATATTGGGCATGTATCAACTTCTCAAGAAGTGTACAAGAAAGTATAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGTCAAGAAGGCATTGAAGCATGTGCATTCTGCTGCTCTAGACAAACTTGATGGTAAAGAGCTAGAGNTGTTGATTGCCATTCTTCCAGACAATAATGGCTCTTTGTATGGTATGATTCTAGAGGAAAACTATTTCACTCCTGCATTAAAGAAACAAAGTCTTTACTCAGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAATATGTATTCAAGATTAATAGACAGTACCTGGCAAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTGAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCGGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCTCACCGCGAAGAACTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGAGGGGTGTAGTTTATGGTGGTATGATCAGAGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATTTTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGCTATATGAGCTTGATGCCATNCGTAAGGCATGTGCATCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCTCGAACAACCACGACGACAGAAACAGCACCGATAAGAGTGGGAATATCTTACCTGGTANAAGTACTGTGGTGGATTCTAAGATCTGTCATCCTACTGAATTCGACTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCGGCTCACTATCATGTCCTCTGGGACGAGAACAATTTCACTGCAGATGAGATTCAGTCTCTAACTAACAACTTATGCTACACCTATGCAAGATGTACACGGTCTGTTTCTGTAGTGCCTCCAGCATACTATGCTCATCTAGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATGTTGCTGAGATTGCTAAACTGAGAGGTGGAAGACCAAAAGATAGGTCTGTTCGGCCACTGCCTGCCCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGATTGAGTGAGGCGCAAAAAAAGAGGCTTCTTCCAAGTAGAGAAACAGCATCATATATATATTATAGGAAAGGGAATGAAAATTGTTCATGTATTGTTGATATCATAATAATATCTGCATGGAAAATTTTGAGTGCCTTAGAGAAGTTTTAGTTTGCCCCGTGTAGAGAAGTTTAAGCCTTAAGGTAATATATCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01156	12117	21410	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001156s00035641.1	PF02170.17	PAZ	224	359	1.90E-35
Glyur001156s00035641.1	PF02171.12	Piwi	522	836	1.80E-101
Glyur001156s00035641.2	PF02170.17	PAZ	224	359	1.80E-35
Glyur001156s00035641.2	PF02171.12	Piwi	522	815	6.30E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.072
SRR1783600	control	5.054
SRR1783602	moderate drought stress	5.778
SRR1811619	moderate drought stress	5.821

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.738
DRR006520	Root Summer glycyrrhizin high producing strain	13.292
DRR006521	Root Winter glycyrrhizin high producing strain	3.488
DRR006522	Root Winter glycyrrhizin high producing strain	3.298
DRR006523	Root Summer glycyrrhizin low producing strain	13.061
DRR006524	Root Summer glycyrrhizin low producing strain	12.514
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.756

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.425
SRR2868004	Drought Stress (root)	4.385
SRR2967015	Control (root)	7.317

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.020
SRR9715740	Leaf	1.263
SRR9715741	Leaf	2.411
SRR9715739	Root	0.168
SRR9715742	Root	6.400
SRR9715743	Root	4.617

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.000
SRR8749028	MeJA induced 9h	0.794
SRR8749029	MeJA induced 9h	0.690
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.081
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.356
SRR8400027	Control - Root	50.488