Gene detail

Gene detail information of Glyur001155s00025136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02250.1	3.00E-64	phloem protein 2-B2
NR	CBI39533.3	1.69E-158	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZVR5\|PP2B2_ARATH	5.00E-73	Putative F-box protein PP2-B2
trEMBL	tr\|C6T4B4\|C6T4B4_SOYBN	2.00E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU16524.1}

Sequence

Transcript Sequence

>Glyur001155s00025136.1
ATGGAAACAGAAATGGAAGGAGAAAGAAGCACGATGGAGTTGCAAGCGTTGCCGGAAGGGTGCATCGCTAACATACTATCGCATACCACTCCCGTGGATGCATGTCGCCTCTCCCTTCTTTGCAAGCCCTTTTGTTCTGCCGCTGAATCCGACACCGTTTGGGATCGTTTCATCCCCACCGATTTTCTCTCAATCGTTTCCACTTCCCAATCTGTATCCTCTTTGCTCACCACCTCTCCCTCCAANAAGTCCCTCTATCTCACTCTCTCAGATCACCCCATCGTCGTTGAGTCGGAACTCTCCATTATTTGGGGTGAGTCTCCTCAGTATTGGGATTGGAGACCCCTACCAGGGTCAAGGTTCCAAGAAGTTGCTTGGCTTCGTGCTGTGTGCTGGTTTGAGATTGGTGGGAGGATAAATACAGGTGCACTGTCCTCAAATACTCACTATGTAGCTTTCCTTGTGTTCGAGATGATTGATGCATCGGGGTTTCACTACTGTCCTGTGGAGTTGTCCATAGGTATACTTGGGGGAGAAAATTGTAGTACCAAAAATGTTTGTTTGGACCCAAGCTTAGAAGATAGGGAACTGGACGACAGATTCCTGGGATTAGAAATTGAATTCCCAAAAGGGAGAAGCGATGGGTTTTGGGAGATCGAGATAGGGGAGTTCTACAATTCAGGCCTAGGAGATGAAGTGCATATACAAGTTAAGGAGACAACGAGTAATATGTGGAAGCGCGGTTTCATTCTTGAAGGAATTGAAGTTAGGCCTAAGAATACGCAGATTCGGTGCTACTTATTGGCAGTGCCGGCAGAACCCGATCAATTTCAATCGTGCGTGCGTGAGTTGCGAGAAGTGAGTGAGAAAAAGAAAATGGAGTTTCAGGCGTTGCCGGAAGGTTGCATTGCTGCCATACTCTCTCGCACAACTCCGGTGGATGCGTGCAGGTTCTCCGTCGTTTCTAAGGCCTTCCGTTCCGCCGCCGAATCCGATTCCGTCTGGGAACGTTTTCTCCCTTCCGATTATTCCGATCTCATCTCACTCTCTCCCTCGCTTGCCAACGCTCCTTCGAAAAAAGCCCTCTATCTCGCTCTCTCTGATCGCCCTATCATCATTGACCAGGGTAAAAAGAGCTTTCAATTGGACAGAAAGAGTGGGAAAAAGTGTTACATGCTTGCTGCCANAGCTCTCACCATTATTTGGGGTGNCACTGAGCACTATTGGAGCTGGACAGCCATGCCAGAGTCCAGGTTCCCTGAGGTTGCTCAGCTTCGTGATGTGTGTTGGCTTGAAATTCGTGGGATGATAAACACCATTGCCCTGTCCCCAAATACTCAGTATGCGGCTTATCTTGTGTTCAAGATGATCGATGCCCGAGGATTTCGTAACCGTCCTGTGGAGTTATCAGTTGGTACCTTATGTGGCAATAGCAGTACCAAAAATGTCTGTTTGGATCCAAACATGGAAGGTACGAACAACAGAGTAGAGGGATTGCAACGTCCTAGTGTGAGAAGCAGCGATNGTTGGTTGGAGATTGAGATGGGGGAGTTCTTCAATTCAGGCCTAGANGATGAAGAAGTGCAGTTGAGTGTTCTCGAGACAAAGGGTGGCAATTGGAAGAGCGGAAAAATGGAGTTGGAGGCGTTACCTGAAGGGTGCATTGCTAACATACTCTCTCTCGCGACTCCGGTGGATGCATGCAGGCTCTCCCTCGTTTCTAAGGTCTTCCGTTCCGCCGCCGAATCCGATTCCGTCTGGGAACGTTTTATCCCTTCCGATTACTCNGATCTCATCGCACTCTCTCCCTCGCTTGCCGACGCTCCTTCTAGAAAAGCTCTCTTTCTNGCTCTCTGTGATCGCCCTATCATCATCGACCAGGGTAAAAAGAGCTTTCAATTGGACAGAAAGAGTGGGAAAAAGTGTTACATGCTTGCTGCCAGAGCTCTCACCATTGTTTGGGGTGACACTGAGCAATACTGGAACTGGACAACCATGCCAGAGTCCAGNTTTCCTGAAGTTGCTAAGCTTCTTGCTGTGTGTTGGCTTGAAATTCGTGGGATGATAAACACCATTGCCTTGTCCCCAAATACTCGGTATGCNGCTTATCTTGTGTTCAACATGACCCATTCCGGAGGATTTCATTACTGGCCTGTGGAGTTATCAGTTGGTACCATATGTGGCCATAGTAGTTCCAAAAATGTCTGTTTGGATCCAAAGATTCCAAACGGGAAAGATCGACGACACAAAAAGGTAGTTGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGGGAGTTCTTCAATTCAGGCCTAGAAGATGAAGAAGTGCAGATGAGTGTTATCGAGATAAAGGGTGGATTTTGGAAGAGCGGTCTCTTACTTGAAGGAATAGAAGTTAGGCCTAAGGAAGGCAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01155	44462	53022	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001155s00025136.1	PF00646.28	F-box	15	58	0.00026
Glyur001155s00025136.1	PF14299.1	PP2	98	259	9.90E-44
Glyur001155s00025136.1	PF00646.28	F-box	295	338	3.20E-05
Glyur001155s00025136.1	PF14299.1	PP2	387	543	9.20E-50
Glyur001155s00025136.1	PF00646.28	F-box	548	591	4.20E-05
Glyur001155s00025136.1	PF14299.1	PP2	639	809	2.10E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.256
SRR1783600	control	26.193
SRR1783602	moderate drought stress	30.161
SRR1811619	moderate drought stress	29.874

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.569
DRR006520	Root Summer glycyrrhizin high producing strain	52.140
DRR006521	Root Winter glycyrrhizin high producing strain	44.801
DRR006522	Root Winter glycyrrhizin high producing strain	43.891
DRR006523	Root Summer glycyrrhizin low producing strain	65.293
DRR006524	Root Summer glycyrrhizin low producing strain	63.532
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.922
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.043

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.556
SRR2868004	Drought Stress (root)	27.922
SRR2967015	Control (root)	40.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.913
SRR9715740	Leaf	36.658
SRR9715741	Leaf	53.006
SRR9715739	Root	52.317
SRR9715742	Root	73.921
SRR9715743	Root	63.737

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	190.456
SRR8749028	MeJA induced 9h	132.231
SRR8749029	MeJA induced 9h	242.913
SRR8749030	Uninduced	65.035
SRR8749031	Uninduced	104.554
SRR8749032	Uninduced	136.195

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.088
SRR8400027	Control - Root	23.470