Gene detail

Gene detail information of Glyur001155s00025133.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07360.1	5.00E-103	plant U-box 9
NR	XP_003590900.1	0	U-box domain-containing protein [Medicago truncatula]
COG	YP_001958455.1	1.00E-07	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SRT0\|PUB9_ARATH	4.00E-140	U-box domain-containing protein 9
trEMBL	tr\|G7I5N0\|G7I5N0_MEDTR	0	Plant U-box protein {ECO:0000313\|EMBL:AES61151.1}

Sequence

Transcript Sequence

>Glyur001155s00025133.1
ATGGCCAAGGAGGAGGTGCAGGCATTGGTGTTGAAGGGCAAGTTGCGGGAACTGGTTAACACTATCGTGGAGGGTGATGACTACACCGTGCAAGCTGCCGACGAGGCTATCACTGCTCTTTCTGCTCTCAGGGATTTGAAATGCAGCGCCTCTTTCTCAAGCAGATTGGAACATTTGCCTGTTCCTCCACATTTTCGATGCCCCATCTCAGGACACATCATGACTGATCCTGTTATCTTGGCCACTGGACAGACTTATGATAGGCCATTCATCCAGAGGTGGCTGAATGAAGTCCATAGGATTTGCCCTCAAACCCAGCAAGNCCTCTCCCACTCCATCCTCACTCCTAATTATTTGGTCCATGACATGATTTCAAAGTGGTGTAAGGAGCATGGAGTTGATCTACAAAGGCCTGTTGGGGACATTGATGATGGAGAAGTAACCGATGCACACAGATACCGTTTGTGCTCACTCCTTCACAATCTGTCATTGTCTCTACTTGACCAAAAAGAAGCTGCGAGAGAGCTTCGGCAGTTATCAAAGCGAATGCCTTCATTTCGAACACTCTTTGGGGAGCCAGAAGTGATTCAACAGTTGCTCAGTCCCTTATCAGCCGGCACGGCTTCTNTTGATCCCGAGCTCCACGAAGACTTGATCACAACTGTTCTAAACCTCTCAATTAACGATAACAATAAGAGAGTGTTTGCAGAGGATGAAAGGGTCATCTCATTGCTTATTGATTCCTTGAAATATTCAGGAACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCTCATTATCAGCTCTTGAATCCAACAAGCACATAATTGGAAAATCTGGGGCTATCAAATACTTGGTTGATCTCTTAGAAGAGGGACACCCATCAGCAATGAAAGATGCTGCTTCGGCCATATTCAACCTATGTATTGCGCATGAAAACAAAGCGAGGACTGTTAGAGAAGGGGCAATTCAGGTCATTCTTGGCAAGATCATGGACCATGTGCTGGTTGATGAGTTGTTGGCTCTGCTGGCACTTCTCTCTACTCATTCCAAGGCTGTTGAAGCATTGGGGAATCATGGTGCTGTCCCTTTCTTGCTGGAACTTCTAAGGGAGAGCATCTCAGAACGCAGCAAGGAGAACTGTGTTGCAGTCTTGTGTACAATCTTTTTCAATGATAAAACAAGGAGGAAGGAGATTAAAGATGATGAAATAGCCAATGGGACACTGTCTAAGATTGCNCAGTGTGGGACTTTAAGAGCCAAGAGGAAAGTTTCTGGTATTCTTGACAGGCTCAACATATCTCAGTCCTCAAAGCACTCCACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01155	32148	33988	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001155s00025133.1	PF04564.10	U-box	61	131	5.80E-20
Glyur001155s00025133.1	PF00514.18	Arm	273	310	6.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.073
SRR1783600	control	0.084
SRR1783602	moderate drought stress	0.320
SRR1811619	moderate drought stress	0.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.167
DRR006522	Root Winter glycyrrhizin high producing strain	0.163
DRR006523	Root Summer glycyrrhizin low producing strain	0.117
DRR006524	Root Summer glycyrrhizin low producing strain	0.222
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.221
SRR2868004	Drought Stress (root)	0.247
SRR2967015	Control (root)	0.093

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.578
SRR9715740	Leaf	0.357
SRR9715741	Leaf	0.629
SRR9715739	Root	0.015
SRR9715742	Root	0.098
SRR9715743	Root	0.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.593
SRR8749028	MeJA induced 9h	0.238
SRR8749029	MeJA induced 9h	0.320
SRR8749030	Uninduced	0.095
SRR8749031	Uninduced	0.430
SRR8749032	Uninduced	0.224

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.411
SRR8400027	Control - Root	0.395