Gene detail information of Glyur001155s00025132 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04160.1 | 4.00E-72 | |
| NR | KEH42972.1 | 1.94E-07 | hypothetical protein MTR_1g079465 [Medicago truncatula] |
| Swissprot | tr|Q9M8X2|U1148_ARATH | 4.00E-101 | U11/U12 small nuclear ribonucleoprotein 48 kDa protein |
| trEMBL | tr|A0A072VMD1|A0A072VMD1_MEDTR | 7.00E-08 | Uncharacterized protein {ECO:0000313|EMBL:KEH42972.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01155 | 24572 | 30098 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001155s00025132.2 | PF05253.7 | zf-U11-48K | 48 | 72 | 1.20E-05 |
| Glyur001155s00025132.5 | PF05253.7 | zf-U11-48K | 48 | 72 | 1.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.422 |
| SRR1783600 | control | 16.914 |
| SRR1783602 | moderate drought stress | 31.243 |
| SRR1811619 | moderate drought stress | 28.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.550 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.667 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.024 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.634 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.258 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.216 |
| SRR2868004 | Drought Stress (root) | 24.318 |
| SRR2967015 | Control (root) | 20.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.477 |
| SRR9715740 | Leaf | 5.084 |
| SRR9715741 | Leaf | 6.245 |
| SRR9715739 | Root | 1.259 |
| SRR9715742 | Root | 5.503 |
| SRR9715743 | Root | 4.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.610 |
| SRR8749028 | MeJA induced 9h | 8.148 |
| SRR8749029 | MeJA induced 9h | 2.123 |
| SRR8749030 | Uninduced | 2.039 |
| SRR8749031 | Uninduced | 1.075 |
| SRR8749032 | Uninduced | 0.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.682 |
| SRR8400027 | Control - Root | 24.715 |