Gene detail information of Glyur001155s00025130 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39160.1 | 9.00E-83 | RmlC-like cupins superfamily protein |
| NR | XP_003590904.1 | 6.39E-146 | Germin-like protein subfamily 1 member [Medicago truncatula] |
| Swissprot | tr|P92999|GL118_ARATH | 1.00E-103 | Germin-like protein subfamily 1 member 18 (Precursor) |
| trEMBL | tr|G7I5N4|G7I5N4_MEDTR | 2.00E-146 | Uncharacterized protein {ECO:0000313|EMBL:AFK44678.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01155 | 21529 | 22629 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001155s00025130.1 | PF00190.17 | Cupin_1 | 64 | 208 | 4.70E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 258.602 |
| SRR1783600 | control | 260.610 |
| SRR1783602 | moderate drought stress | 290.305 |
| SRR1811619 | moderate drought stress | 286.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.070 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.469 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.945 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 363.498 |
| SRR2868004 | Drought Stress (root) | 338.700 |
| SRR2967015 | Control (root) | 382.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.092 |
| SRR9715740 | Leaf | 1.415 |
| SRR9715741 | Leaf | 3.108 |
| SRR9715739 | Root | 592.725 |
| SRR9715742 | Root | 732.425 |
| SRR9715743 | Root | 725.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.339 |
| SRR8749028 | MeJA induced 9h | 1.050 |
| SRR8749029 | MeJA induced 9h | 1.851 |
| SRR8749030 | Uninduced | 0.421 |
| SRR8749031 | Uninduced | 1.458 |
| SRR8749032 | Uninduced | 2.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 792.846 |
| SRR8400027 | Control - Root | 729.983 |