Gene detail

Gene detail information of Glyur001154s00030919

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27190.1	1.00E-45	NB-ARC domain-containing disease resistance protein
NR	KEH33943.1	0	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
COG	YP_002463148.1	5.00E-07	NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9T048\|DRL27_ARATH	3.00E-49	Disease resistance protein At4g27190
trEMBL	tr\|A0A072UXY2\|A0A072UXY2_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:KEH33943.1}

Sequence

Transcript Sequence

>Glyur001154s00030919.1
ATGGCAGATATCGTTATCTCCATTGTGGCTAAAGTTGCTGAATATTTGGTGGGACCGGCTATACGTGAAGGAAAATACTTTCTTTGTGTTAGTAAAGTGACCAAGGATCTCGAGAATGAAAAGAAGGAGCTGATATCTGAAAGAAATAACTTGCAGAATCGAGTTGAACAGGCCAAGGAGAGAACTGAATTAATTGAGGAACCTGTAGAAAAGTGGTTGAATGATGTGAAAAATCTNCTGGATGAGATTGCAGATCTGGAACAAAGGATGAGGGCAAACACCAGTTGTTTTCAGGGACAGTGTCCAACATGGAGAAGATACCATTTGTGCAAGCAAATAGTAGAGAAGATAGAGGCAATGGGGAAATTCAAAGGCAAAAGCAATAATATTCAGCCATTTTCTCACCGTGCTCCTCTTCCAGGCATTCAGTACCAATCATCGGAAAGTTTTAGTTGTTTTGAATCAACAAAAGTGGCTTACAATCAACTCATGGAGGTGCTCCAGGATGATTGCAACTATATGATAGGAGTCTATGGAATGGGTGGATGTGGGAAGACAACTCTTGTAACGGAAGTTGGTAAGAAGGCTGAGGAATCAAAGATGTTTGATAAGGTCATGTTAATCACGGTGTCTCAAACTCCGAACGTCAGAGGCATCCAAGGAAAATTGGCAGATATGCTAAACTTGAAACTGGAGGAAGAAACTGAAGAGGGAAGAGCACAACGTTTATGGTTGAGTTTGAAAGAAAAGAAGCACATTCTTTTAATAGTAGACGATCTGTGGAAGGACTTTAATTTGGTGGACATAGGGATTCCCTTAGACAATGTTAACAGGGGTCCCTGGAAGATCCTCATAACCACTCGTGATCAGCGTGTATGTACTTCAATGGACTGCCAAAAGAGTATTTACGTGGGGCTCCTATCCAAAGATGAGTCTTGGACTCTGTTCCAAAAGCATGCAAACATTGATGACAAATTCTCTGAGTCATTGGATGGTGTGCCACAAAAACTTTGCTATGAATGCAAGGGACTGCTCATAGCAATCGTAAGTGTGGGGTCTTCCTTGAAAGGAAGGCATAAAAGTGATTGGGAGCTGGCATTAGACAAGTTGAGGGATTCAGAGGCATTTGATGATCATGAAGAAGGAGTCAGAGCTGCTTTACGTTGTCTTAAATTAAGCTATGATTATTTAGAAAACACGGAAACAAAGCTGCTATTTCTGATATGTTCAATGTTTCCAGAAGACTATAACATCCCAATAGAAGTTTTGACGAGGCTTGAGATTGGACTGGGTGTGGGAGGTAGATCTTCGTTAAAGTCAAGGAGGAGCTTGATTCAAGCATGCATAAACAAACTTTTAGATTCTTGTTTGCTGATGCAATCCGAAGTGATAATGCATTATCATGAAAGAGAAGACAGTGTGAAGATGCATGACATGGTTCGTGATGCAGCCTTATGGATAGCAAAGAAATCAGAGAATCGCAAAATTTTGGTAAATGTTGACAAACCACTCAACACCTTAGCAGAGATTGACAGTTTAAGAGACTGTTTTGTGATATCCTCATGGCACAATGAAATTTTAACTCTTCCTCAATTGCATGCTCCAAACCTTGAAATGTTATTGCTGAATATAAATACTGATGGTAGATCACAGAGTTCCTTCAATTTGTCACAATTAACATTTGAAGGAATAGAAGGGATTAAGGTTTTTTCTCTAATTGATGCTTGTTACTATCATCCTTCTGGCAGAGTACCATTGTCATTGCCTCCATCAACTCAATTGTTGACAAATGTTCAAACTCTGCGCTTGAAGGGATTGAGGTTAGGTGACATTTCTTTCATAGCAAGCTTAACAAGACTTGAGGTTCTTGACCTGCAAGATTGTGACTTTAATGAACTTCCTGATGAAATAGGAAAACTCAAAAGACTGAAGTTGTTAGATTTGTCAAACTGTGATATTTTACAAAAAAACTATAATGGAGCAATAGGGAAGTGTTTAGAACTAGAAGAGTTGTACGCATCTGATTGTAGGCCAAAAGAGTACCTTTCTCAGAGCATTGTTGATATTGTTACTCTCCCAAAGCTACAGAGGTTTGTGATAGAGGTTATTCCAGTTGATATGCCATATTATTGGGGAAGTTGCAGAAGTACGAGAATTCTAGAAGTATGGGATTTTAATATTTCCAAACTGAGGGCATCTAAAGAGAATAATCTACAGAGCGCTGAAATTGTTTATTTGGAAGGTCTACATGGAGGATGTAAGAATATCGTGCCAGACATGACTGGAGTTGTGGGAGCTATGAATGATTTGAATACTCTCTATCTTCGTGAATGCCTAGAGATAGAATGCATCTTCAATACAAGTACAACCTCTGTTTCCAAGGTAGATGATTTGATTCCCAGGTTGGTCAATTTAGTCATAAAGCAAATGGAAAATTTGAAAGAATTGTGTCGAGGTCCATCTTTGCAAGTGCTACACTTTTTTGAGAAAATGAAGTTACTTTACATAGAACGTTGCATGTTGTTACACGGTATATTTCCACGGGAATGTAACTTACAGAATCTTAGGAGGCTCACAATTTGGGAATGCAATTCTGTCGAGGTACTCTTATCGACACCTGCTGCTCGAAGTTTGCTGCAGCTAGAACATTTAGATATACTGGGTTGTGATGTATTGAAACATATAATTGCAAGCGAAACAGAGCATGGCTGTAATACAAGCCAGGAAATAGTTTCAGCTCCCACGAGTTCTCATCTTCCGATGCCTAATTTAGAGTATGTTCGCATTGGTGGTTGTCCGAAGTTGGAGTCGATATTTCCGATGTGTTACGTTAATGGACTTCCACGACTGCAGCAGATGTATATAGAAAATGCTCCTGAGCTGAAATATGTATTTGATGAATGTGATCACGAGCATCATTCATCTCACCAATATGAGAACCACATCATGCTTCCTCATTTGGAATTTCTCTTACTCAAATATCTTCGAAATCTCGTTGGGATGTGTCCCAAGTATTGTCATGCAAAGTGGCCATCTCAGTCTCTGAAGGACATATATGTATGGTGTTGTCCAGAATTGGCTACATCATGGATTACTGTGATGGCTGGATCTGATCAAAGACAACATCCTATAGATGAAAACTTAACTGCAAAACTGCCACAACTCGTTTTATATGGTTTGCCTCAATTGAACTTCCTACAATGGGACAGATTTGGAGTCTCCAATGTCTTCGGCGTTTACTGTGTGGCTGATTGTGACAAATTAAAATCTCTGTTCTCCATGGAGGTATGTAGAAGCCTACCAGAGTTGATGTCCCTTTCTATTGACCACTGCCCAGAACTGGAACAAATTGTTGCAGCAAATGAACTTGTGCAACTTTCCAATGCTGAAGTGTATTTTCCAAAGCTATACTATATATCCATTGGAAACTGTAACAATTTGAAAAGCCTTTTCCCAGTTGCTATGGTTAAAATGCTTCCACAATTAAGAATTCTTCACATATTAAAAGCCACTCAACTTGAAGAGGTTTTTAGACACAGCAGTGGAGATGACACTATCGATGAAATGGAAATTGTGCTTCCAAACTTGACGAAGTTAACACTGGAAGATCTGCCGAGTTTTGTTGATATCTGCCATGGATGTGAGTTACATGCCGTGGAACTTCAACATCTCCGCATAAATAGATGCCCCAAAACTTCTCCAAGTTTGATTGCAATGCAG

Protein Sequence

>Glyur001154s00030919.1
MADIVISIVAKVAEYLVGPAIREGKYFLCVSKVTKDLENEKKELISERNNLQNRVEQAKERTELIEEPVEKWLNDVKNLLDEIADLEQRMRANTSCFQGQCPTWRRYHLCKQIVEKIEAMGKFKGKSNNIQPFSHRAPLPGIQYQSSESFSCFESTKVAYNQLMEVLQDDCNYMIGVYGMGGCGKTTLVTEVGKKAEESKMFDKVMLITVSQTPNVRGIQGKLADMLNLKLEEETEEGRAQRLWLSLKEKKHILLIVDDLWKDFNLVDIGIPLDNVNRGPWKILITTRDQRVCTSMDCQKSIYVGLLSKDESWTLFQKHANIDDKFSESLDGVPQKLCYECKGLLIAIVSVGSSLKGRHKSDWELALDKLRDSEAFDDHEEGVRAALRCLKLSYDYLENTETKLLFLICSMFPEDYNIPIEVLTRLEIGLGVGGRSSLKSRRSLIQACINKLLDSCLLMQSEVIMHYHEREDSVKMHDMVRDAALWIAKKSENRKILVNVDKPLNTLAEIDSLRDCFVISSWHNEILTLPQLHAPNLEMLLLNINTDGRSQSSFNLSQLTFEGIEGIKVFSLIDACYYHPSGRVPLSLPPSTQLLTNVQTLRLKGLRLGDISFIASLTRLEVLDLQDCDFNELPDEIGKLKRLKLLDLSNCDILQKNYNGAIGKCLELEELYASDCRPKEYLSQSIVDIVTLPKLQRFVIEVIPVDMPYYWGSCRSTRILEVWDFNISKLRASKENNLQSAEIVYLEGLHGGCKNIVPDMTGVVGAMNDLNTLYLRECLEIECIFNTSTTSVSKVDDLIPRLVNLVIKQMENLKELCRGPSLQVLHFFEKMKLLYIERCMLLHGIFPRECNLQNLRRLTIWECNSVEVLLSTPAARSLLQLEHLDILGCDVLKHIIASETEHGCNTSQEIVSAPTSSHLPMPNLEYVRIGGCPKLESIFPMCYVNGLPRLQQMYIENAPELKYVFDECDHEHHSSHQYENHIMLPHLEFLLLKYLRNLVGMCPKYCHAKWPSQSLKDIYVWCCPELATSWITVMAGSDQRQHPIDENLTAKLPQLVLYGLPQLNFLQWDRFGVSNVFGVYCVADCDKLKSLFSMEVCRSLPELMSLSIDHCPELEQIVAANELVQLSNAEVYFPKLYYISIGNCNNLKSLFPVAMVKMLPQLRILHILKATQLEEVFRHSSGDDTIDEMEIVLPNLTKLTLEDLPSFVDICHGCELHAVELQHLRINRCPKTSPSLIAMQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01154	49061	53005	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001154s00030919.1	PF00931.17	NB-ARC	162	426	7.60E-52
Glyur001154s00030919.1	PF12799.2	LRR_4	618	653	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.828
SRR1783600	control	1.968
SRR1783602	moderate drought stress	6.224
SRR1811619	moderate drought stress	6.270

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.050
DRR006520	Root Summer glycyrrhizin high producing strain	3.215
DRR006521	Root Winter glycyrrhizin high producing strain	1.140
DRR006522	Root Winter glycyrrhizin high producing strain	1.016
DRR006523	Root Summer glycyrrhizin low producing strain	1.887
DRR006524	Root Summer glycyrrhizin low producing strain	1.774
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.484

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.770
SRR2868004	Drought Stress (root)	8.893
SRR2967015	Control (root)	8.589

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.031
SRR9715740	Leaf	1.311
SRR9715741	Leaf	4.301
SRR9715739	Root	0.289
SRR9715742	Root	3.244
SRR9715743	Root	2.743

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.771
SRR8749028	MeJA induced 9h	7.135
SRR8749029	MeJA induced 9h	2.525
SRR8749030	Uninduced	3.295
SRR8749031	Uninduced	2.741
SRR8749032	Uninduced	1.611

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.282
SRR8400027	Control - Root	11.676