Gene detail

Gene detail information of Glyur001154s00030914

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27190.1	3.00E-41	NB-ARC domain-containing disease resistance protein
NR	XP_003600185.1	0	Nbs-lrr resistance protein [Medicago truncatula]
COG	YP_006866864.1	6.00E-07	lipoprotein, leucine rich repeat protein [Psychroflexus torquis ATCC 700755]
Swissprot	tr\|O81825\|DRL28_ARATH	4.00E-47	Probable disease resistance protein At4g27220
trEMBL	tr\|G7J039\|G7J039_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES70436.2}

Sequence

Transcript Sequence

>Glyur001154s00030914.1
ATGGGAGATGTTGCCTTTGATTCAATGGCAGATATCGTTATCTCCATTGTGGCTAAAGTTGCTGAATATTTGGTGGGACCGGCTATACGTGAAGGAAAATACTTTCTTTGTGTTAGTAAAGTGATCAAGGATCTCGAGAATGAAAAGGAGGAGCTGATATCCGAAAGAAATAACTTGCAGGATCGAGTTGAACAGGCCAAGGAGAGAACTGAATTAATTGAGGAACCTGTGGAAAAGTGGTTGAATGATGTGAAAAATCTACTGGATGAGATTGCAGATCTGGAACAAAGGATGAGGGCAAACACCAGTTGTTTTCAGGGACGGTGTCCAACATGGAGAAGATACCGTTTGTGCAAGCAAATAGTAGAGAAGATAGAGGCAATGGGGAAATTCAAAGGCAAAAGCAATAATATTCAGCCATTTTCTCACCGTGCTCCTCTTCCAGGCATTCAGTACCAATCATCGGAAAGTTTTAGTTGTTTTGAATCAACAAAAGTGGCTTACAATCAACTCATGGAGGCACTTCAGGATGATTGCATCTTTAAGATAGGAGTGTATGGAATGGGTGGATGTGGGAAAACAACTCTTGTAACAGAAGTTGGTAAGAAGGCTGAGGAATCAAAGATGTTTGATAAGGTCATGTTAATCACGGTGTCTCAAACTCCGAACATAAGAGACATTCAAGGAAAAATGGAAGATATGTTGAACTTGAAGCTGAAGGAAGAAACTGAAGATGGAAGAGCACAACGTTTATGGTTGAGCTTGAAAGAAAAGAAGCGCATTCTTTTAATAATGATCTGTGGGGGGGACTTTAAATTGGAGAAAATAGGGATTCCCTTAGACAATGTTAGCAGGGGCACCTGGAAGATCCTCATAACCACTCGTGATCAGCATGTATGTACTTCAATGGACTGCCAGAGTATTCAGTTGGGGCTCCTATCCGATGATGAGTCTTGGACTCTGTTCCAAGAGCATGCAAAGATTGATGACAAATTCTCTGAGTCATTGGATGGTGTGCCACAAAAACTTTGCTATGAATGCAAGGGACTGCTCATAGCAATTGTAAGTGTGGGGTCTTCCTTGAAAGGAAGGCATACAAATGATTGGGAGCTGGCATTAGACAAGTTGAGGGATTCAGAGGCATTTGATGATCATGAAGAAGGAGTCACAACTGCTTTACGTTGTCTTAAATTAAGCTATGATTATTTAGAAAACACAGAAGCAAAGCTGCTATTTCTGATGTGTTCAATGTTTCCAGAAGACTATAACATCCCAATGGAAGATTTGACGAGGCTTGCGATTGGACTGGGTGTGGGAGGTAGATCTTCGTTAAAGTCAAGGAGGAGCTTGATTCAAGCATGCATAAACAAACTTTTAGATTCTTGTTTGTTGATGCATAGTGACCCTGATTGGGAAGATTGTGTGAAGATGCATGACATGGTTCGTGACGCAGCCTTATGGATAGCAAAGAAATCAGAGAATCGCAAGATTTTGGTAAATGTTGACAAGCCACTCGGCACCTTAGCCGAGAATGACAGTTTAAGAGACTGTTTCATGGTATCATCATGGCACGATGAAATTTTAAGTTTTCCTCAATTGCATGCTTCAAACCTTGAAATGCTTTTGCTGAATATAAATACTCGTTATGAATACCAAAATTCCTTCGATTTGTCACATTTAACATTTGAAGGAATACAAAAGATTAAGGTTTTTTCTCTAACCGATGTGTGTGATGATCGTTTAAATGGAGTACCATTGTCATTGCCTCCATCAACTCAATTGTTGACAAATGTTCAAACTCTGCGCTTGAAGGGATTGAGGTTAGGTGACATTTCTATCGTCGCAAGCTTAACAAGACTTGAGGTTCTTGACTTGCAAGATTGTGGCTTCAATGAACTTCCTGATGAAATAGGAAAACTCAAAAGACTGAAGTTGTTAGATTTGTCAAACTGTGATATTTTACAAAAAAACTATAATGGAGCAATAGGGAAGTGTTCAGAACTAGAAGAGTTGTACGCTTCAGATTGTAGGCCAAAAGAGTACCTTTCTCAGAGCATTGTTGATATTGTTACTCTCCCAAAGCTACAGAGGTTTGTGATTGGGGATATTCCAATTATTATGCCATATTATTTGAGAAGTTTGAAAAGTACAAGTACAAGATCTCTAGAAGTACGGGATTTTAATATTTCCAAACTGAGGGCATCTGAAGAGAATAATCTACAGATCGCTGAAGTTATTTCTTTGGAAGGCCTACATGGAGGATGTAAGAATATCGTGCCAGACGTGATTGGAGTTGTTGGAGCCATGAATGGTTTGAATACTCTCTATCTCCGTGAATGCCTAGAGATAGAATGCATCTTCAATACAAGTGCAACCTCTGACTCCAAGGTAGATGATTTGATTCCCAGTTTGGTCAATTTATACCTAACGCAAATGGAAAATTTGAAAGAACTGTGTCGAGGTCCACCTATGCAAGTGCTACACTTTTTTGAGAAAATAAAATCACTTCACATACAGCGTTGCATGTCGTTACACAACATATTTCCACGGGAATGTACCATACGGAATCTTAAGAGCCTCACAATTTTGGTATGCAAGTCTGTCGAGGTACTCTTATCGACATCTGCTGCTCGAAGTTTGCAGCAGCTAGAAAATTTACATATACAGGATTGTGATGTATTGAAACATATAATTGCAAGCGGAACAGAGCATGGTTGTAATACAAGCCAGAAAATAGTTTCAGCTCCCACGAGTTCTCATCTTCCAATGCCTAATTTAAAGCGTGTTCACATTGACCGTTGTCCGAAGTTGGAGTCGATATTTCTGATGTGTTACGTTGAAGGACTTCCACGACTGCAACATATGCATATAGGAAATGCTCCTGAGCTTAAATATGTATTTGATGAATGTGATCACGAGCATCATTCATCTCACCAATATGAGAACCACATCATGCTTCCTCATTTGCAAGATCTCAAACTCAAATATCTTCGAAATCCCGTTGGGATGTATCCCGAGTATTGTCATGCAAAGTGGCCATCTCAATCTCTGAAGGACATAACTGTGTGGTATTGTCCAAAATTGGCTATATCATGGATTACTGTGACGGCTGGATCTAATCAAAGACAACATCCTGTAGATGAAAACTTAACTGCAGAACTGGCACGACTCAATTTAGATGGTTTGCCTCAATTGAACTTCCTACAATGGGCGAGTCCTACTCCAGGACAGATTTGGAGTCTCCAATGTCTTCGGCGTTTACATGTGGCTAATTGTGAAAAATTAAAATCTCTGTTCTCCATGGAGGTATGTAGAAGCCTACCAGAGTTGATGTCCCTTACTATTCACCACTGCCTAGAACTGGAACAAATTGTTGCAGCAAATGAACTTGTACAACTTTCCAATGCTGAAGTGTATTTTCCAATGCTATACTATATATACATTGAAAAGTGTAACAAGTTGAAAAGCCTTTTCCCGGTTGCTATGGTTAGAATGCTTCCACAATTAAGAATTCTTCACATATTAAGAGCCACTCAACTTGAAGAGGTTTTTAGACACAGCATTGGAGATGACACTATCGATGGAATGGAAATTGTGCTTCCAAACTTGGCGAAGTTAAGACTGGAAGATCTGCCGAGTTTTGTTGATATCTGCCATGGATGTGAGTTACATGCTGTGGAGCTTCGACATCTCCGCATAAATGGATGCCCCAAAACTTCTCCAAGTTTGATTGCAATGCGGACCAATGAAGAAGAGGGTGAAGTTTCTCTAGATGATGTCGAACTTTTTCTAGACGATGTCGAACTTTTTGGCAGTGACACAAGTGGTGATTTGGAAGAACTTATCATTGAAGATGTTATGAACGATTCTTCTATTGGAGACCTAATCCCTATACTCCCAACTCTGAGAAATCAATGGACAATGAAGTTCTACAACCAGAATAACTGTTTGAAATATGGCTAA

Protein Sequence

>Glyur001154s00030914.1
MGDVAFDSMADIVISIVAKVAEYLVGPAIREGKYFLCVSKVIKDLENEKEELISERNNLQDRVEQAKERTELIEEPVEKWLNDVKNLLDEIADLEQRMRANTSCFQGRCPTWRRYRLCKQIVEKIEAMGKFKGKSNNIQPFSHRAPLPGIQYQSSESFSCFESTKVAYNQLMEALQDDCIFKIGVYGMGGCGKTTLVTEVGKKAEESKMFDKVMLITVSQTPNIRDIQGKMEDMLNLKLKEETEDGRAQRLWLSLKEKKRILLIMICGGDFKLEKIGIPLDNVSRGTWKILITTRDQHVCTSMDCQSIQLGLLSDDESWTLFQEHAKIDDKFSESLDGVPQKLCYECKGLLIAIVSVGSSLKGRHTNDWELALDKLRDSEAFDDHEEGVTTALRCLKLSYDYLENTEAKLLFLMCSMFPEDYNIPMEDLTRLAIGLGVGGRSSLKSRRSLIQACINKLLDSCLLMHSDPDWEDCVKMHDMVRDAALWIAKKSENRKILVNVDKPLGTLAENDSLRDCFMVSSWHDEILSFPQLHASNLEMLLLNINTRYEYQNSFDLSHLTFEGIQKIKVFSLTDVCDDRLNGVPLSLPPSTQLLTNVQTLRLKGLRLGDISIVASLTRLEVLDLQDCGFNELPDEIGKLKRLKLLDLSNCDILQKNYNGAIGKCSELEELYASDCRPKEYLSQSIVDIVTLPKLQRFVIGDIPIIMPYYLRSLKSTSTRSLEVRDFNISKLRASEENNLQIAEVISLEGLHGGCKNIVPDVIGVVGAMNGLNTLYLRECLEIECIFNTSATSDSKVDDLIPSLVNLYLTQMENLKELCRGPPMQVLHFFEKIKSLHIQRCMSLHNIFPRECTIRNLKSLTILVCKSVEVLLSTSAARSLQQLENLHIQDCDVLKHIIASGTEHGCNTSQKIVSAPTSSHLPMPNLKRVHIDRCPKLESIFLMCYVEGLPRLQHMHIGNAPELKYVFDECDHEHHSSHQYENHIMLPHLQDLKLKYLRNPVGMYPEYCHAKWPSQSLKDITVWYCPKLAISWITVTAGSNQRQHPVDENLTAELARLNLDGLPQLNFLQWASPTPGQIWSLQCLRRLHVANCEKLKSLFSMEVCRSLPELMSLTIHHCLELEQIVAANELVQLSNAEVYFPMLYYIYIEKCNKLKSLFPVAMVRMLPQLRILHILRATQLEEVFRHSIGDDTIDGMEIVLPNLAKLRLEDLPSFVDICHGCELHAVELRHLRINGCPKTSPSLIAMRTNEEEGEVSLDDVELFLDDVELFGSDTSGDLEELIIEDVMNDSSIGDLIPILPTLRNQWTMKFYNQNNCLKYG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01154	9994	29743	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001154s00030914.1	PF00931.17	NB-ARC	170	434	3.20E-46
Glyur001154s00030914.1	PF12799.2	LRR_4	618	653	5.90E-08
Glyur001154s00030914.2	PF00931.17	NB-ARC	170	434	3.10E-46
Glyur001154s00030914.2	PF12799.2	LRR_4	618	653	5.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.619
SRR1783600	control	0.660
SRR1783602	moderate drought stress	2.723
SRR1811619	moderate drought stress	2.767

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.055
DRR006520	Root Summer glycyrrhizin high producing strain	2.923
DRR006521	Root Winter glycyrrhizin high producing strain	3.281
DRR006522	Root Winter glycyrrhizin high producing strain	3.300
DRR006523	Root Summer glycyrrhizin low producing strain	0.364
DRR006524	Root Summer glycyrrhizin low producing strain	0.501
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.264

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.309
SRR2868004	Drought Stress (root)	2.291
SRR2967015	Control (root)	1.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.311
SRR9715740	Leaf	0.845
SRR9715741	Leaf	0.641
SRR9715739	Root	0.862
SRR9715742	Root	0.363
SRR9715743	Root	0.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.114
SRR8749028	MeJA induced 9h	0.618
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.139
SRR8749031	Uninduced	0.084
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.249
SRR8400027	Control - Root	5.979