Gene detail information of Glyur001152s00039843 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60670.2 | 2.00E-32 | Protein of unknown function (DUF3755) |
| NR | XP_004513598.1 | 1.68E-123 | PREDICTED: uncharacterized protein LOC101490247 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072VRS0|A0A072VRS0_MEDTR | 3.00E-121 | Homeodomain transcription factor superfamily protein, putative {ECO:0000313|EMBL:KEH40815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01152 | 20598 | 31157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001152s00039843.1 | PF12579.3 | DUF3755 | 322 | 354 | 8.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.648 |
| SRR1783600 | control | 6.615 |
| SRR1783602 | moderate drought stress | 5.717 |
| SRR1811619 | moderate drought stress | 5.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.185 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.157 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.840 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.919 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.753 |
| SRR2868004 | Drought Stress (root) | 24.134 |
| SRR2967015 | Control (root) | 18.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.709 |
| SRR9715740 | Leaf | 12.283 |
| SRR9715741 | Leaf | 8.904 |
| SRR9715739 | Root | 2.311 |
| SRR9715742 | Root | 5.318 |
| SRR9715743 | Root | 4.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.818 |
| SRR8749028 | MeJA induced 9h | 2.693 |
| SRR8749029 | MeJA induced 9h | 2.209 |
| SRR8749030 | Uninduced | 2.004 |
| SRR8749031 | Uninduced | 0.677 |
| SRR8749032 | Uninduced | 0.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.075 |
| SRR8400027 | Control - Root | 14.893 |