Gene detail

Gene detail information of Glyur001150s00037550

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54160.1	3.00E-64	O-methyltransferase 1
NR	KEH40861.1	2.23E-167	caffeic acid O-methyltransferase [Medicago truncatula]
COG	YP_007063273.1	3.00E-24	hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|P93324\|CHOMT_MEDSA	3.00E-102	Isoliquiritigenin 2'-O-methyltransferase
trEMBL	tr\|A0A072VH15\|A0A072VH15_MEDTR	8.00E-168	Caffeic acid O-methyltransferase {ECO:0000313\|EMBL:KEH40861.1}

Sequence

Transcript Sequence

>Glyur001150s00037550.1
ATGGTAATGCATGATACTAGCTATAAAATTAGATATATAAGAAGCACACAACATAAATTGAGTGAAAAGGGAAAGACCATAGAAAGTCACGCAAAAATTGGCTCCAATTCCGAACAAAGTCAACTTCCTTTAGAGGCAGCAAAGGTCGATGATGCTTACCTCTCTGCTTTGGTTTTGTGCTTTAGTCGGGTCTTTCCTGCAATCCTAAATGCTGCTGTCGATCTCAACTTGTTNGAGATCATAGCTAAGGCACAAAATTCAAGCTTATCTGCCTCTGAGATTGCTTCTCAACTTCCAAATCAACACCCTGAATTGGCCAATAGGCTTGAACGCATGCTGCCTGTGCTAGCTAGTTATTCTCTTCTCACTTGCTCCATTCGCATCAATGGAGATGGCAAGAGGGAAAGAGTTTATGCCCTCTCACCCATGGGTGAATACTTTGCATGTGATAAAGATGGAGGCGCTTTGGGTCCACTCTCAACTCTAATTCATCAAGGATATCATGACGATAAAGAGCTGAATCACATTTTTAACAAAGCAATGNCCCAATCTGGTCCANTAGAAATTAAAAGGATCCTTAAACTATACAAAGGATTTGAGGGAGTATCAACACTGGTTGACGTGGGAGGTGGGGTAGGACAANCNTTGAAACAAATTATCTCTGGATATCCTTCAATTAAAGGGATTAATTTTGATTTGCCTCAAGTGATTCAAGATGCACCACCTCATCCAGGGATAGAGCATGTTGGAGGAAATATGTTTGAAAGTGTTCCAAAGGGTGATTCCATCTTACTAAAGATTTTAAGGAATTGCCACAAAGCTTTGCCAAAACATGGAAAGGTGATTGTTTTGGACTATATAATTCCAGAAGTCCCAAATCCAAGCAATATCTCTAAGCATACTTGCATTATTGACAACCTCATGTTTTTAATCAATGGTGGAAAGGAAAGAACTGAGAACGAATTTCAGAATTTATGCAAAACATCTGGATTTTCCAAATTTCAAATTACAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01150	40453	42520	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13066	E2.1.1.68, COMT	EC:2.1.1.68	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001150s00037550.1	PF08100.6	Dimerisation	68	117	3.40E-14
Glyur001150s00037550.1	PF00891.13	Methyltransf_2	166	326	2.30E-50
Glyur001150s00037550.2	PF08100.6	Dimerisation	68	117	3.60E-14
Glyur001150s00037550.2	PF00891.13	Methyltransf_2	166	339	1.60E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.207
SRR1783600	control	8.748
SRR1783602	moderate drought stress	9.060
SRR1811619	moderate drought stress	8.866

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.050
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.750
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.918

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.559
SRR2868004	Drought Stress (root)	7.363
SRR2967015	Control (root)	4.177

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.457
SRR9715740	Leaf	27.403
SRR9715741	Leaf	11.586
SRR9715739	Root	0.786
SRR9715742	Root	2.949
SRR9715743	Root	4.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.180
SRR8749031	Uninduced	0.072
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.952
SRR8400027	Control - Root	11.725