Gene detail information of Glyur001150s00037548.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 5.00E-49 | O-methyltransferase 1 |
| NR | KEH40859.1 | 4.11E-115 | caffeic acid O-methyltransferase [Medicago truncatula] |
| COG | YP_007130428.1 | 1.00E-09 | O-demethylpuromycin O-methyltransferase [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|P93324|CHOMT_MEDSA | 2.00E-72 | Isoliquiritigenin 2'-O-methyltransferase |
| trEMBL | tr|A0A072VFU6|A0A072VFU6_MEDTR | 2.00E-115 | Caffeic acid O-methyltransferase {ECO:0000313|EMBL:KEH40859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01150 | 22598 | 24095 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001150s00037548.1 | PF08100.6 | Dimerisation | 37 | 86 | 2.50E-15 |
| Glyur001150s00037548.1 | PF00891.13 | Methyltransf_2 | 136 | 228 | 8.80E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 537.600 |
| SRR1783600 | control | 536.774 |
| SRR1783602 | moderate drought stress | 471.329 |
| SRR1811619 | moderate drought stress | 468.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.544 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 480.108 |
| SRR2868004 | Drought Stress (root) | 334.656 |
| SRR2967015 | Control (root) | 271.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.628 |
| SRR9715740 | Leaf | 0.588 |
| SRR9715741 | Leaf | 0.160 |
| SRR9715739 | Root | 82.230 |
| SRR9715742 | Root | 302.813 |
| SRR9715743 | Root | 236.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.140 |
| SRR8749028 | MeJA induced 9h | 4.368 |
| SRR8749029 | MeJA induced 9h | 2.794 |
| SRR8749030 | Uninduced | 14.051 |
| SRR8749031 | Uninduced | 19.342 |
| SRR8749032 | Uninduced | 5.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1247.738 |
| SRR8400027 | Control - Root | 998.978 |